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315 results • Page 1 of 7
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100
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36
replies
27k
views
33 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 4 days ago by ▴ 20 • written 9.4 years ago by ★ 3.6k
4
votes
2
replies
168
views
Forum: advice on course selection for a bioinformatics career.
career
updated 5 days ago by 97k • written 5 days ago by • 0
0
votes
1
reply
163
views
Forum: Graduate in molecular biology and genetics
biology genetics Molecular
updated 17 days ago by 127k • written 17 days ago by • 0
3
votes
1
reply
191
views
Forum: Open problems in genomics 2023
genomics pangenomics
updated 17 days ago by 127k • written 17 days ago by 4.6k
5
votes
3
replies
335
views
Forum: Someone posted the same question to StackOverflow and Biostars. The results will blow your mind.
meta
updated 18 days ago by 20k • written 18 days ago by ▴ 60
18
votes
10
replies
749
views
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
20 days ago by bompipi95 ▴ 120
1
vote
0
replies
133
views
Forum: Penetrance versus heritability
penetrance heritability
20 days ago by tacrolimus ▴ 110
10
votes
15
replies
837
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta ucsc-genome-browser
25 days ago by Maximilian Haeussler ★ 1.5k
29
votes
10
replies
5.1k
views
10 follow
Forum: Interesting/useful/beautiful bio sequence viz tools
viz python visualisation
updated 17 days ago by 38k • written 5.0 years ago by 20k
9
votes
8
replies
4.6k
views
9 follow
Forum: insert figure and code in the post of Biostars?
meta biostars
updated 17 days ago by 38k • written 7.8 years ago by ★ 2.1k
19
votes
1
reply
3.5k
views
Forum: Best programming language for bioinformatics - R Language
programming R
updated 16 days ago by 70k • written 2.1 years ago by ▴ 240
1
vote
0
replies
548
views
Forum: Questions about going into Bioinformatics from an IT career
career
updated 17 days ago by 38k • written 17 months ago by ▴ 10
17
votes
8
replies
1.8k
views
7 follow
Forum: Where should a biologist start when learning computational biology & systems biology
data-science systems-biology computational-biology
updated 10 days ago by 38k • written 19 months ago by ▴ 50
8
votes
11
replies
1.2k
views
6 follow
Forum: Paper: Ten simple rules for biologists initiating a collaboration with computer scientists
article opinion
updated 17 days ago by 38k • written 2.4 years ago by 13k
6
votes
4
replies
775
views
Forum: What are the major advances in Bioinformatics since 2016
Bioinformatics
updated 10 days ago by 38k • written 20 months ago by ▴ 30
20
votes
12
replies
37k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 25 days ago by 38k • written 9.2 years ago by 9.5k
6
votes
12
replies
12k
views
11 follow
Forum: Online/remote/distance learning/ - partime/fulltime - PhD, Bioinformatics in USA
PhD university
updated 17 days ago by 38k • written 6.5 years ago by ▴ 20
9
votes
5
replies
1.6k
views
Forum: Should I get my MS in Bioinformatics at UCSC or GA Tech
genome
updated 17 days ago by 38k • written 2.0 years ago by ▴ 10
50
votes
20
replies
4.9k
views
18 follow
Forum: Explain bioinformatics to a 10 year old
bioinformatics
updated 17 days ago by 38k • written 7.1 years ago by ★ 1.1k
3
votes
2
replies
1.1k
views
Forum: If I want to learn bioinformatics as a computer scientist, would it help to learn Data science and Machine Learning first?
computer-scientist machine-learning
updated 17 days ago by 38k • written 2.0 years ago by • 0
3
votes
5
replies
890
views
Forum: Hide Emails from Guests
meta biostars
updated 17 days ago by 38k • written 2.3 years ago by ▴ 750
0
votes
0
replies
480
views
Forum: Tools to check if the user defined pathway is enriched in the data
RNA-Seq sequencing R
updated 17 days ago by 38k • written 2.0 years ago by ▴ 50
28
votes
7
replies
1.5k
views
Forum: Do you have favorite icons for bioinformatics?
ubuntu
updated 17 days ago by 38k • written 2.0 years ago by ▴ 250
1
vote
0
replies
448
views
Forum: Determining Heteroplasmy per sample
heteroplasmy bcftools
updated 17 days ago by 38k • written 2.0 years ago by ▴ 10
4
votes
4
replies
626
views
Forum: Looking for a CS PhD Program + tips
PhD
updated 17 days ago by 38k • written 2.1 years ago by • 0
29
votes
4
replies
6.6k
views
Forum: Update to tbb (2021.1.1, conda-forge) breaks bowtie2 (bioconda)
software-error bowtie2 bioconda conda tbb
updated 17 days ago by 38k • written 2.1 years ago by ▴ 240
126
votes
44
replies
27k
views
16 follow
Forum: Trimming adapter sequences - is it necessary?
NGS adapter RNA-Seq
updated 17 days ago by 38k • written 6.5 years ago by ▴ 970
2
votes
0
replies
544
views
Forum: Need recommendations on best certificates to take to boost bioinformatics career and income.
courses
updated 17 days ago by 38k • written 2.1 years ago by ▴ 20
1
vote
0
replies
567
views
Forum: Help EMBL-EBI maintain its services: articulating the value of open data
embl-ebi open-data
updated 17 days ago by 38k • written 2.1 years ago by 23k
0
votes
1
reply
552
views
Forum: What is the relationship between Medical Science & Computing (MSC) and NIH?
career
updated 17 days ago by 38k • written 2.1 years ago by ★ 1.1k
16
votes
11
replies
1.2k
views
10 follow
Forum: Suggest common programming tasks for biologists who are novice programmers
education
updated 17 days ago by 38k • written 2.1 years ago by ▴ 40
1
vote
4
replies
684
views
Forum: Very high ratio of cases to controls - how to increase statistical power?
gwas SNP
updated 17 days ago by 38k • written 2.1 years ago by ▴ 10
1
vote
4
replies
863
views
Forum: is valid to apply several cut offs thresholds to a data-matrix used to perform coexpression analysis until reach the desire result?
RNA-Seq matrix-filtering coexpression-analysis
updated 17 days ago by 38k • written 2.1 years ago by • 0
4
votes
6
replies
777
views
Forum: What are some areas of bioinformatics that are overdone?
bioinformatics
updated 17 days ago by 38k • written 2.1 years ago by 21k
2
votes
5
replies
592
views
Forum: Unit test / integration test packages for R for bioinformatic projects?
R
updated 17 days ago by 38k • written 2.1 years ago by ★ 3.3k
6
votes
5
replies
1.0k
views
Forum: Pacific Bio Long Reads vs Illumina Short Reads
next-gen RNA-Seq alignment
updated 17 days ago by 38k • written 2.1 years ago by ▴ 40
40
votes
24
replies
2.1k
views
13 follow
Forum: What programming language do you use the most in your work? Which one do you like the best?
Programming Python R Scripting
updated 17 days ago by 38k • written 2.1 years ago by ▴ 80
1
vote
3
replies
1.8k
views
Forum: MOOC for AI and Machine learning for Bioinformatics
ML AI
updated 17 days ago by 38k • written 2.6 years ago by ★ 1.5k
0
votes
0
replies
451
views
Forum: How to deal with contamination in bulkseq samples? Looking at correlated genes?
RNA-Seq
updated 17 days ago by 38k • written 2.1 years ago by • 0
57
votes
43
replies
14k
views
8 follow
Forum: Best RNA-Seq aligner: A comparison of mapping tools
NGS alignment genome RNA-Seq sequence
updated 17 days ago by 38k • written 4.2 years ago by 9.9k
23
votes
7
replies
1.2k
views
6 follow
Forum: Where to start? Newbie trying to enter the world of computational biology getting lost
cytoscape RNA-Seq R
updated 17 days ago by 38k • written 2.2 years ago by ▴ 60
7
votes
4
replies
690
views
Forum: Employer Insights for Bioinformatics Job Seekers
advice career
updated 17 days ago by 38k • written 2.2 years ago by ▴ 130
13
votes
7
replies
2.9k
views
9 follow
Forum: What are the 5 biggest challenges/ opportunities in Bioinformatics going into 2021?
research challenges
updated 13 days ago by 38k • written 2.2 years ago by ▴ 50
11
votes
11
replies
2.9k
views
8 follow
Forum: Best open source genome browser in 2020
genome-browser genomics
updated 5 days ago by 38k • written 2.4 years ago by ▴ 30
84
votes
22
replies
3.4k
views
12 follow
Forum: is fortran still used in bioinformatics?
FORTRAN R
updated 17 days ago by 38k • written 3.8 years ago by ▴ 180
0
votes
2
replies
1.6k
views
Forum: Invitation to submit book chapter (Bioinformatics and evolutionary biology) for spinger book (Only three chapters left)
Evolutionary-biology
updated 5 days ago by 38k • written 2.3 years ago by ▴ 30
8
votes
3
replies
1.7k
views
Forum: List of free, online training resources for researchers
ChIP-Seq online-course RNA-Seq genome
updated 13 days ago by 38k • written 3.0 years ago by ▴ 80
0
votes
1
reply
1.2k
views
Forum: MS Bioinformatics after MBBS
MBBS career Masters Pakistan
updated 5 days ago by 38k • written 3.0 years ago by • 0
46
votes
9
replies
7.8k
views
10 follow
Forum: Bioinformatics For Clinicians - What To Teach Them?
education
updated 25 days ago by 38k • written 9.3 years ago by ▴ 140
0
votes
0
replies
845
views
Forum: Phasing with Falcon
phasing falcon Assembly phase
updated 13 days ago by 38k • written 3.0 years ago by 7.7k
315 results • Page 1 of 7
Recent Votes
Answer: GetBM - GERP conservation score for GRCm39
A: circos plot gene expression by RNA-Seq
Create Interval List for Picard CollectRNASeqmetrics
Answer: multiallelic variants
Answer: LIMMA calculates identical adj.P.Val for different proteins from proteomics
Comment: Hard clip fastq
Answer: Hard clip fastq
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Popular Question to seta ★ 1.8k
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Recent Replies
Comment: Installing rlang version 1.1.0 by Medha • 0
Password: bQFDPMHbbT I want to install ExomeDepth, these dependencies were not getting installed on its own so I installed it before insta…
Answer: getTable ignores query ranges by Kyle ▴ 10
The short answer is you can theoretically do this you just need to a) make your SNPs are two base-pairs in length (i.e. add 1 to the end) a…
Answer: Installing rlang version 1.1.0 by Lluís R. ★ 1.2k
Having a package duplicated means they are at a different `.libPaths()` sites. Check which version is in which directory and directly remov…
Answer: Somatic truth set by samuel ▴ 180
I think I have found an naswer to my own question. Should anyone have the same question as of March 2023 the relevant data and information…
Answer: GetBM - GERP conservation score for GRCm39 by Kyle ▴ 10
Final solution thanks to Ben's help:: # convert df to Grange. snp_gr <-makeGRangesFromDataFrame(BM_SNPs, seqnames.field = "seqnam…
Comment: GetBM - GERP conservation score for GRCm39 by Kyle ▴ 10
Perfect answer, thanks Ben!
Answer: MapSplice2 gives error if the thread count (-p value) is greater than 2 by vishal.koparde ▴ 10
Any updates??
Comment: how to know what adapter sequences to trim for RNA-seq? by lunarskye222 • 0
Do you happen to know if the middle part of this udi barcode (GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCTACATATCTCG) is also part of the TruSeq a…
Comment: Hard clip fastq by GenoMax 127k
If you simply want the reads to be compatible in length then do not adapter trim.
Comment: Hard clip fastq by samuel ▴ 180
@ATpoint, so no adapter trimming first? Just trim the raw fastq?
Answer: Confused on strandedness, what are antisense transcripts? by dsull ★ 4.0k
Think of it on the DNA level: If the mRNA made is the same sequence as the "sense" DNA strand (except U's instead of T's), it is a "sense" …
Comment: Protein name in GenBank by GenoMax 127k
If you must do this programmatically then collect all cases where things differ in order of words (or number of words) like the example abo…
Answer: Hard clip fastq by GenoMax 127k
You can also use `reformat.sh` from [**BBMap suite**][1] as follows reformat.sh -Xmx2g in1=R1.fq.gz in2=R2.fq.gz out1=R1_trim.fq.gz …
Answer: Hard clip fastq by ATpoint 70k
Use `seqtk trimfq`. It makes sense to trim first to your desired length and then run identical downstream processing for a fair comparison.…
Comment: Protein name in GenBank by Mensur Dlakic ★ 23k
I think you either take time to do it properly, or you will end up missing some proteins. BLAST sequence search, even on 1500 genomes, can …
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