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Why I am getting this histogram of CpG coverage using methylkit, is this the failure of bisulfite library preparation![enter image descript…
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Thanks, António for your kind and detailed responses. You helped clear my doubt about scaling!
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Thanks for the feedback fellas! I agree with the aforementioned!
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i collect a large list of tools for visualization, some are specialized for SVs and re-arrangements. you can filter by tag (SV, CNV, compar…
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You can use `vg find -P` for this. This command is not really designed to be used frequently throughout the genome (each invocation loads t…
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I would just draw them in by hand where you want them.
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I know that CpG types can be identified using whole genome bisulphite data. But could it be possible using MeDIP data too?
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some common ones include
1000 genomes vcf (large, multi-sample) http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/
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Thanks Istvan for your reply. I think these programs will do the same as Trinotate. Trinotate searches against numerous databases and gener…
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And the hg38 version can be found here:
https://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/cytoBand.txt.gz
And for convenience, upda…
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