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Tutorial:
ChIP-Seq Analysis Tutorial
Epigenetics
Bowtie2
MACS2
ChIP-Seq
Motif
updated 6 days ago by
ATpoint
70k • written 6 days ago by
Simon
▴ 30
276
votes
39
replies
164k
views
29 follow
Tutorial:
How to download raw sequence data from GEO/SRA
fastq
SRA
bam
GEO
updated 4 days ago by
Ram
38k • written 8.6 years ago by
Obi Griffith
20k
12
votes
4
replies
1.8k
views
Tutorial:
Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR
DESeq2
updated 5 days ago by
Ram
38k • written 5.5 years ago by
KVC_bioinfo
▴ 570
1
vote
0
replies
1.9k
views
Tutorial:
A short primer to pairwise alignment
pairwise-alignment
blastp
pam
blosum
updated 4 days ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
5
votes
1
reply
1.7k
views
Tutorial:
A Guide to DNA Sequencing Techniques Part 1
dna
sanger
sequencing
pyrosequencing
updated 4 days ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
5 results • Page
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Comment: mpileup to sync file
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Comment: GO enrichment analysis
by
hellokwmin
• 0
Thank you for your reply. Unfortunately, the organism I am using is non-model organism (i.e. one of plant species). So, with the informati…
Comment: Total No of Genes of GENCODE Release 43
by
ATpoint
70k
obj_43 is not defined in this code chunk which decreases my confidence in the result. Just count the unique gene IDs.
Comment: Aberrant splicing in bulk RNAseq
by
txema.heredia
▴ 70
Hi, I'm finally dealing with this type of data: UMI (or Unique Fragment Identifier) bulk RNA. I am using kallisto-bus, but I am having tro…
Answer: GO enrichment analysis
by
Antonio R. Franco
★ 5.0k
You don't mention which organism are you using. If it is a model system, you only need to select the organism, and introduce the names of …
Comment: mpileup to sync file
by
Pierre Lindenbaum
153k
> to a sync what is a `sync` ?
Comment: mpileup to sync file
by
qstefano
▴ 20
what is not clear to you?
Comment: mpileup to sync file
by
Pierre Lindenbaum
153k
> l to covert a mpileup file to a sync what does it mean please ?
Answer: Sites for Computer Aided Drug Designing
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contact
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Hi, you can take a look at this [Computer-aided Enzyme Design][1] [1]: https://www.creativebiomart.net/Computer-aided-Enzyme-Design.…
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ATpoint
70k
It's commercial software, please contact their support. In general, more than a one-liner is appreciated when asking questions.
Comment: How to demultiplex single end - dual index run - NextSeq 500
by
Apex92
▴ 260
Dear GenoMax, This is the header of my ```RunInfo.xml`` file: ``` <?xml version="1.0"?> <RunInfo xmlns:xsd="http://www.w3.org/2001/XMLSch…
Answer: Variant caller reports a homozygous variant genotype, but more reads are associa
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4.6k
You're right, but MQ=5 - so this is a really poorly mappable region. Check the QUAL field - here 6.6 - against more typical and robust …
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This is the reason why the rule is executed.
Comment: Clustering with monocle 3
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fracarb8
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You should add some figures and the code/steps you are using. as written, your question is very subjective (e.g. how do you discriminate?),…
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Yuri
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Hi @and did you ever figure out why guppy was resulting in 90% of reads in unclassified folder? I am running into the same issue, and am…
Comment: Retrieve hgnc_symbol from XM_ refseqs using BiomaRt
by
ladina.hoesli
• 0
Thank you very much, this helps a lot!
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