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125 results • Page
2 of 3
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2
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1
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794
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Herald:
The Biostar Herald for Monday, January 16, 2023
herald
updated 15 months ago by
seidel
11k • written 15 months ago by
Biostar
2.7k
2
votes
0
replies
651
views
Herald:
The Biostar Herald for Monday, January 09, 2023
herald
16 months ago by
Biostar
2.7k
3
votes
0
replies
707
views
Herald:
The Biostar Herald for Monday, January 02, 2023
herald
16 months ago by
Biostar
2.7k
3
votes
1
reply
891
views
Herald:
The Biostar Herald for Tuesday, December 27, 2022
herald
updated 16 months ago by
LChart
3.9k • written 16 months ago by
Biostar
2.7k
3
votes
0
replies
693
views
Herald:
The Biostar Herald for Monday, December 19, 2022
herald
16 months ago by
Biostar
2.7k
2
votes
0
replies
539
views
Herald:
The Biostar Herald for Monday, December 12, 2022
herald
17 months ago by
Biostar
2.7k
3
votes
0
replies
611
views
Herald:
The Biostar Herald for Monday, December 05, 2022
herald
17 months ago by
Biostar
2.7k
2
votes
1
reply
638
views
Herald:
The Biostar Herald for Monday, November 28, 2022
herald
updated 17 months ago by
Istvan Albert
100k • written 17 months ago by
Biostar
2.7k
2
votes
0
replies
547
views
Herald:
The Biostar Herald for Monday, November 21, 2022
herald
17 months ago by
Biostar
2.7k
7
votes
1
reply
688
views
Herald:
The Biostar Herald for Monday, November 14, 2022
herald
updated 17 months ago by
cmdcolin
★ 3.8k • written 17 months ago by
Biostar
2.7k
3
votes
0
replies
575
views
Herald:
The Biostar Herald for Monday, November 07, 2022
herald
18 months ago by
Biostar
2.7k
2
votes
0
replies
644
views
Herald:
The Biostar Herald for Monday, October 31, 2022
herald
18 months ago by
Biostar
2.7k
4
votes
1
reply
723
views
Herald:
The Biostar Herald for Monday, October 24, 2022
herald
updated 18 months ago by
shelkmike
★ 1.2k • written 18 months ago by
Biostar
2.7k
2
votes
0
replies
625
views
Herald:
The Biostar Herald for Monday, October 17, 2022
herald
18 months ago by
Biostar
2.7k
4
votes
0
replies
620
views
Herald:
The Biostar Herald for Monday, October 10, 2022
herald
19 months ago by
Biostar
2.7k
1
vote
0
replies
594
views
Herald:
The Biostar Herald for Monday, October 03, 2022
herald
19 months ago by
Biostar
2.7k
3
votes
0
replies
575
views
Herald:
The Biostar Herald for Monday, September 26, 2022
herald
19 months ago by
Biostar
2.7k
1
vote
0
replies
574
views
Herald:
The Biostar Herald for Monday, September 19, 2022
herald
19 months ago by
Biostar
2.7k
1
vote
0
replies
667
views
Herald:
The Biostar Herald for Monday, September 12, 2022
herald
20 months ago by
Biostar
2.7k
1
vote
0
replies
582
views
Herald:
The Biostar Herald for Monday, September 05, 2022
herald
20 months ago by
Biostar
2.7k
2
votes
0
replies
557
views
Herald:
The Biostar Herald for Monday, August 29, 2022
herald
20 months ago by
Biostar
2.7k
2
votes
0
replies
541
views
Herald:
The Biostar Herald for Monday, August 22, 2022
herald
20 months ago by
Biostar
2.7k
1
vote
0
replies
570
views
Herald:
The Biostar Herald for Monday, August 15, 2022
herald
21 months ago by
Biostar
2.7k
2
votes
0
replies
569
views
Herald:
The Biostar Herald for Monday, August 08, 2022
herald
21 months ago by
Biostar
2.7k
2
votes
0
replies
632
views
Herald:
The Biostar Herald for Monday, August 01, 2022
herald
21 months ago by
Biostar
2.7k
3
votes
0
replies
650
views
Herald:
The Biostar Herald for Wednesday, July 27, 2022
herald
updated 21 months ago by
Istvan Albert
100k • written 21 months ago by
Biostar
2.7k
1
vote
0
replies
638
views
Herald:
The Biostar Herald for Tuesday, July 19, 2022
herald
21 months ago by
Biostar
2.7k
1
vote
0
replies
534
views
Herald:
The Biostar Herald for Monday, July 11, 2022
herald
22 months ago by
Biostar
2.7k
1
vote
0
replies
564
views
Herald:
The Biostar Herald for Thursday, July 07, 2022
herald
22 months ago by
Biostar
2.7k
3
votes
0
replies
577
views
Herald:
The Biostar Herald for Tuesday, June 28, 2022
herald
22 months ago by
Biostar
2.7k
1
vote
0
replies
609
views
Herald:
The Biostar Herald for Monday, June 20, 2022
herald
22 months ago by
Biostar
2.7k
1
vote
0
replies
604
views
Herald:
The Biostar Herald for Monday, June 13, 2022
herald
23 months ago by
Biostar
2.7k
3
votes
0
replies
646
views
Herald:
The Biostar Herald for Monday, June 06, 2022
herald
23 months ago by
Biostar
2.7k
3
votes
0
replies
616
views
Herald:
The Biostar Herald for Monday, May 30, 2022
herald
23 months ago by
Biostar
2.7k
2
votes
0
replies
665
views
Herald:
The Biostar Herald for Monday, May 23, 2022
herald
updated 23 months ago by
Rob
6.5k • written 23 months ago by
Biostar
2.7k
5
votes
0
replies
714
views
Herald:
The Biostar Herald for Monday, May 16, 2022
herald
24 months ago by
Biostar
2.7k
1
vote
0
replies
564
views
Herald:
The Biostar Herald for Monday, May 09, 2022
herald
24 months ago by
Biostar
2.7k
2
votes
2
replies
799
views
Herald:
The Biostar Herald for Monday, May 02, 2022
herald
updated 2.0 years ago by
Istvan Albert
100k • written 2.0 years ago by
Biostar
2.7k
1
vote
0
replies
539
views
Herald:
The Biostar Herald for Thursday, April 28, 2022
herald
2.0 years ago by
Biostar
2.7k
3
votes
0
replies
580
views
Herald:
The Biostar Herald for Monday, April 18, 2022
herald
2.1 years ago by
Biostar
2.7k
2
votes
0
replies
547
views
Herald:
The Biostar Herald for Monday, April 11, 2022
herald
2.1 years ago by
Biostar
2.7k
3
votes
0
replies
594
views
Herald:
The Biostar Herald for Monday, April 04, 2022
herald
2.1 years ago by
Biostar
2.7k
1
vote
0
replies
562
views
Herald:
The Biostar Herald for Tuesday, March 29, 2022
herald
2.1 years ago by
Biostar
2.7k
2
votes
1
reply
709
views
Herald:
The Biostar Herald for Tuesday, March 22, 2022
herald
updated 2.1 years ago by
dariober
14k • written 2.1 years ago by
Biostar
2.7k
2
votes
0
replies
578
views
Herald:
The Biostar Herald for Tuesday, March 15, 2022
herald
2.1 years ago by
Biostar
2.7k
1
vote
0
replies
497
views
Herald:
The Biostar Herald for Wednesday, March 09, 2022
herald
2.2 years ago by
Biostar
2.7k
2
votes
0
replies
546
views
Herald:
The Biostar Herald for Tuesday, February 22, 2022
herald
2.2 years ago by
Biostar
2.7k
1
vote
0
replies
564
views
Herald:
The Biostar Herald for Monday, February 14, 2022
herald
2.2 years ago by
Biostar
2.7k
2
votes
1
reply
665
views
Herald:
The Biostar Herald for Monday, February 07, 2022
herald
updated 2.2 years ago by
Dunois
★ 2.5k • written 2.2 years ago by
Biostar
2.7k
3
votes
0
replies
520
views
Herald:
The Biostar Herald for Monday, January 31, 2022
herald
2.3 years ago by
Biostar
2.7k
125 results • Page
2 of 3
Recent Votes
Comment: Which hg38 file?
Answer: Which hg38 file?
Answer: Where to get the following bed file?
How to save GRanges object to csv file
Answer: How to get proteins from GFF file resulted from MAKER annotation
Answer: Gene ontology and homologs
Comment: anRichment is missing
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Recent Replies
Comment: Where to get the following bed file?
by
GenoMax
142k
SeqCap kits are discontinued. If you don't find the said file your will need to email Roche Support per this page: https://sequencing.roche…
Answer: Where to get the following bed file?
by
LChart
3.9k
UCSC maintains a list of exome probe sets and targets. You could check there: https://hgdownload.soe.ucsc.edu/gbdb/hg19/exomeProbesets/
Comment: How to compute TPM normalized values for TCGA miRNA data?
by
Ngrin
• 0
Yes, I found some similar ideas on biostar repository. So you think the authors have done something wrong? And I should only consider CPM?
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 390
It is difficult to answer how they were able to identify *S. hominis* without seeing the code or paper. To address your second question, i…
Comment: Problem with Seurat package in PercentageFeatureSet function
by
bk11
★ 2.4k
Did you check where the `features.tsv.gz` file had Gene IDs or Ensembl IDs?
Answer: How to compute TPM normalized values for TCGA miRNA data?
by
dsull
★ 6.0k
TPM is irrelevant for miRNA-seq; CPM works fine. TPM tries to adjust for length effects by dividing by gene length (e.g. reducing the im…
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
"I'm also unsure what qualifies as a lateral gene." The [README where you reference](https://metacells.readthedocs.io/en/latest/readme.htm…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
sovrappensiero
▴ 90
Ah, yes this makes sense! I knew this was an issue with, say, using kraken2 on shotgun metagenomic reads, but I don't have a lot of experi…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴ 40
Thank you. Maybe it's best to confirm with the authors about how they're getting responder/non-responder labels. I'll do that now.
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴ 390
If you sequenced a short hypervariable region, most of your sequence reads will not be able to be assigned to the species level. One possi…
Comment: anRichment is missing
by
GenoMax
142k
Consider emailing Dr. Horvath about this. Until enough people make him aware of this issue WGCNA "problem" is unlikely to get fixed.
Comment: anRichment is missing
by
Tatyana
• 0
Unfortunately, there are only tutorials and codes for tutorials for WGCNA, not installation files for any their packages... :(
Comment: anRichment is missing
by
GenoMax
142k
See this link for the WGCNA documentation and code from Peter Langfelder : https://bioinformatics.stackexchange.com/questions/21885/where-t…
Comment: anRichment is missing
by
Tatyana
• 0
The problem is back, Horwath's lab web is down again. Is it possible to get anRichment istallation file somewhere? (The greater problem is …
Comment: 16S rRNA microbiome differential abundance analysis with DESeq2 finds same micro
by
andres.firrincieli
3.6k
1. Maribaculaceae is a family not a genus 2. Who said that ASV with the same taxonomic classification must have the same behaviour? 3. With…
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