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News: Participate in a NCBI/NIAID Virtual Codeathon: VCF Files for Population Genomics, Jul 31 - Aug 4, 2023
VCF SARS-CoV-2 NCBI Codeathon
2 days ago by PeterC_NCBI ▴ 260
3
votes
0
replies
1.1k
views
News: Course on Programming for Evolutionary Biology
Evolution R genome Python
updated 2 days ago by 39k • written 4.5 years ago by ★ 2.2k
3
votes
1
reply
2.0k
views
News: NCBI : New API Keys for the E-utilities
pubmed eutils ncbi api
updated 10 days ago by 39k • written 5.6 years ago by 154k
3
votes
0
replies
990
views
News: New command line tool for annotating variants, vai.pl
UCSC SNP VAI
updated 15 days ago by 39k • written 6.0 years ago by ▴ 580
3
votes
1
reply
6.4k
views
News: LinkedOmics - a web portal for TCGA/CPTAC data
TCGA cptac cancer
updated 10 days ago by 39k • written 5.5 years ago by 129k
3
votes
1
reply
806
views
News: Results are now available for the precisionFDA NCI-CPTAC Multi-omics Enabled Sample Mislabeling Correction Challenge!
precisionFDA NCI challenge algorithm multi-omics
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
3
votes
2
replies
1.1k
views
News: Genome Informatics meeting software list
meetings genomics informatics software
updated 10 days ago by 39k • written 5.6 years ago by 26k
3
votes
0
replies
880
views
News: Free online Ensembl course
webinar Ensembl mooc training online
updated 3 days ago by 39k • written 4.8 years ago by 23k
3
votes
0
replies
1.2k
views
News: NIH Strategic Plan for Data Science
nih data-science
updated 5 days ago by 39k • written 5.2 years ago by 129k
3
votes
2
replies
852
views
News: BETA Testing Opportunity for new RNA-seq data analysis tool
beta-testing RNA-seq multi-omics ngs
updated 1 day ago by 39k • written 4.4 years ago by • 0
3
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0
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1.8k
views
News: Free Training in Bioinformatic analysis available with Pine Biotech T-BioInfo
RNA-Seq biotech next-gen-sequencing
updated 15 days ago by 39k • written 5.9 years ago by ▴ 70
3
votes
1
reply
1.4k
views
News: Bioconductor 2017 Conference, Boston, July 26-28
R conference Bioconductor
updated 16 days ago by 39k • written 6.2 years ago by 26k
3
votes
0
replies
845
views
News: Invitation to submit articles to the Bioconductor Gateway on F1000Research
bioconductor
updated 5 days ago by 39k • written 5.2 years ago by 26k
3
votes
0
replies
1.7k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 9 days ago by 39k • written 5.4 years ago by ★ 1.2k
3
votes
1
reply
945
views
News: Results are now available for the precisionFDA CDRH Biothreat Challenge!
NGS metagenomics FDA biothreat
updated 1 day ago by 39k • written 4.3 years ago by ▴ 60
3
votes
1
reply
1.2k
views
News: Ensembl in Google Summer of Code
Ensembl Internship Google-Summer-of-Code GSOC
updated 17 days ago by 39k • written 6.2 years ago by 23k
2
votes
3
replies
1.8k
views
News: PDX Models: Tumor-stroma interaction
transcriptome pdx R ChIP-Seq
updated 12 days ago by 39k • written 5.8 years ago by ▴ 70
2
votes
2
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2.9k
views
News: Upcoming Hands-On NGS Data Analysis Workshops 2018
Mapping Workshop RNA-Seq Quality-Control DNA-Seq
updated 10 days ago by 39k • written 5.5 years ago by 9.9k
2
votes
1
reply
1.4k
views
News: BIOSG17 Workshop on High Throughput Computing in Bioinformatics/Biomedicine using OSG
Workshop OSG Biomedicine HTC
updated 12 days ago by 39k • written 5.8 years ago by ▴ 10
2
votes
7
replies
1.4k
views
News: Bioinformatics workshop or training courses
RNA-Seq next-gen ChIP-Seq
updated 3 days ago by 39k • written 4.8 years ago by ▴ 140
2
votes
0
replies
1.1k
views
News: Registrations open: Engaging Researchers in Good Data Management - 15th November 2017, Cambridge, UK
conference research life-sciences
updated 11 days ago by 39k • written 5.7 years ago by ▴ 220
2
votes
0
replies
1.1k
views
News: BIOINFORMATICS SERVICES PROVIDER - BIO KNOWLEDGE LAB, S.L.
bioinformatics-services
updated 2 days ago by 39k • written 4.6 years ago by ▴ 20
2
votes
1
reply
955
views
News: PrecisionFDA and NCI-CPTAC Mislabeling Challenge is Launching on September 24th!
precision-medicine NCI FDA proteomics.RNA
updated 3 days ago by 39k • written 4.7 years ago by ▴ 150
2
votes
0
replies
2.3k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
Statistics R BioCounductor
updated 11 days ago by 39k • written 5.7 years ago by ▴ 20
2
votes
0
replies
1.6k
views
News: Introduction to bioinformatics for DNA and RNA sequence analysis (IBDR01) - last few places
RNA-Seq next-gen workshop
updated 3 days ago by 39k • written 4.8 years ago by ▴ 60
2
votes
0
replies
1.3k
views
News: Community Feedback - OBF mailing list issues
Biojava Biopython EMBOSS BioPerl Bioruby
updated 9 days ago by 39k • written 5.4 years ago by ★ 2.2k
2
votes
0
replies
1.1k
views
News: April Galaxy News: UseGalaxy.org gets siblings; GCC Deadlines; GCCBOSC Childcare...
bosc galaxy events
updated 5 days ago by 39k • written 5.1 years ago by ▴ 610
2
votes
0
replies
2.0k
views
News: Workshop 'Analysis of single cell RNA-seq data' . 5-9 February 2018
RNA-Seq scRNAseq
updated 10 days ago by 39k • written 5.6 years ago by ★ 2.3k
2
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3
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1.4k
views
News: GCCBOSC 2018: A Bioinformatics Community Conference Call for Abstracts
Galaxy-Community-Conference BOSC GCC
updated 8 days ago by 39k • written 5.3 years ago by ★ 2.2k
2
votes
0
replies
3.1k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 12 days ago by 39k • written 5.8 years ago by ★ 2.3k
2
votes
0
replies
1.1k
views
News: Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders
variant-prioritization mendelian-disorders
updated 15 days ago by 39k • written 6.0 years ago by ★ 1.2k
2
votes
0
replies
728
views
News: The deadline for Subchallenge 1 of the precisionFDA NCI-CPTAC Mislabeling Challenge is 11/4!
multi-omics challenge
updated 2 days ago by 39k • written 4.6 years ago by ▴ 40
2
votes
0
replies
2.6k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 1 day ago by 39k • written 4.3 years ago by 98k
2
votes
0
replies
4.1k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 12 days ago by 39k • written 5.9 years ago by ★ 2.3k
2
votes
0
replies
1.4k
views
News: 4th Annual Viral Genomics & Bioinformatics Training Course (20-24 August 2018)
next-gen virus genomics course
updated 9 days ago by 39k • written 5.4 years ago by ▴ 60
2
votes
0
replies
1.1k
views
News: Coming Soon precisionFDA Hidden Treasures Warm Up Challenge, July 18 - September 12, 2017
next-gen-sequencing
updated 12 days ago by 39k • written 5.9 years ago by ▴ 90
2
votes
0
replies
1.8k
views
News: Coding,data management and Shiny applications using RStudio for evolutionary biologists
coding data-management R shiny
updated 17 days ago by 39k • written 6.2 years ago by ▴ 110
2
votes
2
replies
2.4k
views
News: Interview Dealing with RADseq data: some tips from our instructors
NGS RADseq
updated 10 days ago by 39k • written 5.6 years ago by ★ 2.3k
2
votes
1
reply
1.2k
views
News: of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event galaxy paper
updated 15 days ago by 39k • written 6.0 years ago by ▴ 610
2
votes
0
replies
838
views
News: GWAS course in Canada
GWAS
updated 1 day ago by 39k • written 4.2 years ago by ★ 2.3k
2
votes
1
reply
751
views
News: Gene set enrichment and pathway analysis in HT data
next-gen-sequencing RNA-Seq
updated 1 day ago by 39k • written 4.3 years ago by ★ 2.3k
2
votes
2
replies
1.4k
views
News: User-friendly Bioinformatics From RNA Seq to Biological Interpretation
machine-learning RNA-seq
updated 3 days ago by 39k • written 4.8 years ago by ▴ 10
2
votes
2
replies
1.2k
views
News: GeNets: a unified web platform for network-based genomic analyses
networks pathways RNA-Seq visualization
updated 3 days ago by 39k • written 4.9 years ago by ★ 5.2k
2
votes
2
replies
1.2k
views
News: Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R next-gen-sequencing
updated 10 days ago by 39k • written 5.5 years ago by ★ 2.3k
2
votes
6
replies
2.4k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 12 days ago by 39k • written 5.8 years ago by ▴ 130
2
votes
3
replies
1.2k
views
News: Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction dna-extraction rna-seq
updated 3 days ago by 39k • written 4.7 years ago by ▴ 20
2
votes
0
replies
918
views
News: Free Ensembl browser workshop: Hinxton, Cambridge, UK, 17 October 2018
training course ensembl workshop
updated 3 days ago by 39k • written 4.8 years ago by ▴ 330
2
votes
0
replies
2.2k
views
News: Course on "Genomic data visualisation and manipulation using Python"
genome next-gen RNA-Seq
updated 11 days ago by 39k • written 5.7 years ago by ▴ 60
2
votes
1
reply
1.8k
views
News: Genomic Data Visualization and Interpretation Workshop
next-gen R genome RNA-Seq
updated 15 days ago by 39k • written 5.9 years ago by ★ 2.3k
2
votes
0
replies
907
views
News: Programmatic access uniprot.org: Deprecation of legacy REST URLs /batch and /mapping - please replace by /uploadlists
UniProt
updated 4 days ago by 39k • written 5.0 years ago by ★ 2.2k
440 results • Page 2 of 9
Recent Votes
Answer: IGV displays genomic coordinates in a 1-based system or 0-based?
RNAseq expression data log2 transformed has negative values.
Samtools: "Too Many Open Files"
Filtering bad quality probes in illumina microarray data
gene filtering for agilent microarray using Limma
A: Identification Of Significant Differences Between Phylogentic Trees Using Distan
A: How to filter vcf file on minimum genotype depth and quality for each sample
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Popular Question to Sam ▴ 150
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Recent Replies
Answer: Counting intronic reads in bulk RNA-seq by swbarnes2 13k
Are you sure this is appropriate for bulk RNASeq? I thought intronic reads for single cell were only counted in nuclear preps.
Answer: Single cell chemistry by swbarnes2 13k
Are you sure these samples are 10x? How likey is it that the sequencing group messed up and ran the samples wrongly?
Comment: How to deal with duplicated gene IDs in TCGA RNA expression data? by Vincent Laufer ★ 2.8k
are they distinct transcript IDs but the same gene ID? can you provide any additional context?
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
that didn't work either
Answer: Why are some WES VCFs larger than others? by Vincent Laufer ★ 2.8k
Hi @kermit and prash (and others)! Nice discussion. I wanted to offer some **biological rationales** in addition to the technical reasons …
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by WouterDeCoster 47k
There is no `:` after `rule fastqc`
Comment: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Dhatri Badri • 0
sorry that was a typo while i was copying my code! I still get the same error
Comment: too many zeros in 16S rRNA amplicon sequencing data by andres.firrincieli 3.3k
You have too many ASV (40k) and I think this is a problem related to the denoising (DADA2) of NovaSeq 6000 sequencing data. Maybe this post…
Answer: SyntaxError (Perhaps you forgot a comma?) in snakefile when running FastQC. by Pierre Lindenbaum 154k
> fastq.gz". what is the dot after `fastq.gz" ` ?
Comment: DownsampleSam by Pierre Lindenbaum 154k
1) I think this is just a warning 2) there must be another error displayed 3) look at samtools view --subsample 4) don't use loops but use…
Comment: ABySS genome assembler by npavliukovec • 0
Hello, yes, I tried it, but I have to do my home work on university's remote computer, unfortunatelly I go an error, when I try to use abys…
Comment: desgin a primer for CDS by yuxiang • 0
how can you know the primer is not bind to other gene site? how can you desgin an experiment? I use the FISH to identify the gene, how abo…
Comment: desgin a primer for CDS by yuxiang • 0
sorry for my late reply, I am a student, my profossor ask me to dsgin a primer for the specific cDNA, I have solved now, thanks for your re…
Comment: vg: Mapping fewer reads to a genome graph than a linear reference by samuel.a.odonnell ▴ 470
In this case filtering for quality might help correct for this overattributing feature?
Comment: ABySS genome assembler by GenoMax 129k
Did you see this guidance from ABySS manual: https://github.com/bcgsc/abyss#optimizing-the-parameters-k-and-kc
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