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15 results • Page
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News:
New ebook: From cell line to Command line to learn computational biology
unix
snakemake
computational-biology
RNA-seq
12 days ago by
Ming Tommy Tang
★ 3.6k
3
votes
0
replies
142
views
News:
NCBI BLAST+ 2.2.15 now available for download
NCBI
Taxonomy
BLAST
11 days ago by
PeterC_NCBI
▴ 370
1
vote
0
replies
179
views
News:
course - Advanced Python Programming
Python-Programming
updated 25 days ago by
Ram
41k • written 25 days ago by
carlopecoraro2
★ 2.4k
0
votes
3
replies
1.0k
views
News:
:: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq
NGS
RNA-Seq
Workshop
19 days ago by
David Langenberger
10k
0
votes
0
replies
156
views
News:
Genemod - Lab Management Software
lab-management-software
research
updated 20 days ago by
Ram
41k • written 21 days ago by
Genemod
• 0
0
votes
0
replies
125
views
News:
Online expert taught RNA-Seq workshop
workshop
12 days ago by
fturner
▴ 10
0
votes
0
replies
156
views
News:
Course: Genome Assembly using Oxford Nanopore Sequencing
GenomeAssembly
Nanopore
Bioinformatics
21 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
162
views
News:
Course. - Computational Tumor Evolution
TumorEvolution
CancerGenomics
Bioinformatics
16 days ago by
carlopecoraro2
★ 2.4k
0
votes
1
reply
120
views
News:
Course: Genome Assembly and Annotation
GenomeAssembly
GenomeAnnotation
Longreads
Bioinformatics
Biodiversity
updated 3 days ago by
sil_bioinfo
▴ 30 • written 3 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
127
views
News:
Course - RNAseq in non-model organisms
Pacbio
RNAseq
Nanopore
13 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
176
views
News:
GWAS course
R
Bioinformatics
GWAS
10 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
164
views
News:
GWAS course
R
GWAS
updated 25 days ago by
Ram
41k • written 25 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
118
views
News:
Course - Introduction to R Shiny
R
Shiny
DataVisualisation
12 days ago by
carlopecoraro2
★ 2.4k
0
votes
0
replies
187
views
News:
Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq
DNAseq
NGS
Workshop
16 days ago by
Lars
★ 1.0k
0
votes
0
replies
150
views
News:
Course - Introduction to Bayesian Data Analysis
R
Statistics
RegressionModeling
Bayesian
27 days ago by
carlopecoraro2
★ 2.4k
15 results • Page
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Recent Votes
Comment: Bioinformatics: what do you think of it in the next 20 years?
Comment: KEGG DATABASE
Answer: From TPM to raw counts
Answer: GENE ONTOLOGY FOR TOMATO-ITAG4.1 OR 4
Answer: From TPM to raw counts
Comment: From TPM to raw counts
NOEL: An extremely fast Non-Overlapping Exon Length calculator written in Rust
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Recent Replies
Answer: Error in blast+
by
Mensur Dlakic
★ 25k
Joys of doing Bioinformatics on Windows, and consequently dealing with spaces in file and directory names. I suggest you move your datab…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★ 25k
I assume here you mean the usefulness for common tasks such as file manipulation and pipeline creations. How would one do sequence assembly…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★ 25k
There is no single language that is best suited for all areas of Bioinformatics. If one's main interest is RNA-seq, R will probably be more…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Brian Bushnell
19k
It depends on specifically what you will be doing. But IMO the order of importance is Bash > Python > R.
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us
by
bkffadia
• 0
![Galaxy Command Line][1] [1]: /media/images/8c45586a-e3e3-46dd-b06b-a9788a6e
Comment: RNA seq
by
Istvan Albert
99k
there is no need to "average" anything, the point of replicates and RNA-Seq in general, is to measure the same thing several times and use …
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Istvan Albert
99k
I would say every scientist needs to know R - so if you don't know R it would serve you well to learn it. In my opinion Python is not we…
Answer: using RMA normalized microarray in Limma
by
ATpoint
78k
Arrays do not have counts. RMA-proceased data are fine. See limma user guide.
Comment: RNA seq
by
ATpoint
78k
What is the question? I assume you googled 'differential RNA-seq' and tried the obvious tools such as DESeq2 and limma?
Answer: Can't install hisat2 with miniconda
by
Istvan Albert
99k
You have installed the wrong version of conda. Even on M1 (arm64 CPU) you need to be using the Intel-based (x64 CPU) conda installer. So …
Comment: Bioinformatics: what do you think of it in the next 20 years?
by
Istvan Albert
99k
Famous poet once said: "We are what we were - and we will become what we are." The previous generation sets the stage for the next.
Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
by
CTLong
▴ 20
After reads are mapped to the genome, there are algorithms that quantify the number of mapped reads onto a genomic locus. Some of these alg…
Comment: Bioinformatics: what do you think of it in the next 20 years?
by
GenoMax
136k
> what do you think of it in the next 20 years? It will be what people like you make of it (assuming you are just starting out and that is…
Comment: Fastest way to convert BED to GTF/GFF with gene_ids?
by
cmdcolin
★ 3.4k
thanks for making these great tools
Answer: Dimensionality reduction on data sets with variable dimensions
by
Mensur Dlakic
★ 25k
Not sure whether what you want to do will be informative. That aside, UMAP works with sparse data. Simply insert missing values for shorter…
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