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158 results • Page
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News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 2 days ago by
Ram
39k • written 3.3 years ago by
Ben_Ensembl
★ 2.2k
8
votes
8
replies
2.3k
views
News:
Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook
education
updated 1 day ago by
Ram
39k • written 3.3 years ago by
Istvan Albert
98k
2
votes
4
replies
916
views
News:
Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R
RNA-seq
Bioconductor
updated 1 hour ago by
Ram
39k • written 3.1 years ago by
carlopecoraro2
★ 2.3k
0
votes
4
replies
826
views
News:
Pan-Structural Variation hackathon in the Cloud!
SV
sequencing
updated 2 days ago by
Ram
39k • written 3.3 years ago by
Medhat
9.6k
8
votes
4
replies
1.6k
views
News:
supporting vg users on biostars
variation-graph
genome
vg
vgteam
updated 6 days ago by
Ram
39k • written 3.7 years ago by
Erik Garrison
★ 2.4k
6
votes
4
replies
982
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 1 hour ago by
Ram
39k • written 3.1 years ago by
carlopecoraro2
★ 2.3k
1
vote
3
replies
934
views
News:
4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS
RNA-Seq
DNA-Seq
updated 2 days ago by
Ram
39k • written 3.3 years ago by
David Langenberger
9.9k
9
votes
3
replies
4.5k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 6 days ago by
Ram
39k • written 3.7 years ago by
alserg
▴ 830
1
vote
2
replies
1.5k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 1 day ago by
Ram
39k • written 3.2 years ago by
vkkodali_ncbi
★ 3.5k
4
votes
2
replies
1.1k
views
News:
Hands-On Workshop: How to use bisulfite-treated sequencing to study DNA methylation (BS-Seq, Bisulfite-Seq, WGBS)
Workshop
methylation
bisulfite
updated 4 days ago by
Ram
39k • written 3.7 years ago by
Lars
▴ 970
1
vote
2
replies
580
views
News:
Ensembl reduced functionality, early March
ensembl
updated 2 days ago by
Ram
39k • written 3.4 years ago by
Emily
23k
0
votes
2
replies
521
views
News:
Reduced functionality of Ensembl and Ensembl Genomes on the 13th November
ensembl
updated 3 days ago by
Ram
39k • written 3.6 years ago by
Emily
23k
0
votes
1
reply
1.4k
views
News:
:: FINALL CALL :: RNA-Seq Data Analysis Workshop for Beginners - Registraion to be closed
NGS
RNA-Seq
Training
updated 3 days ago by
Ram
39k • written 3.5 years ago by
David Langenberger
9.9k
0
votes
1
reply
1.7k
views
News:
Course: Introduction to GWAS (BERLIN)
GWAS
R
Python
Snakemake
updated 3 days ago by
Ram
39k • written 3.6 years ago by
carlopecoraro2
★ 2.3k
4
votes
1
reply
979
views
News:
Bioinformatics Workflows with Nextflow
Netflow
reproducibility
Workflows
updated 3 days ago by
Ram
39k • written 3.5 years ago by
carlopecoraro2
★ 2.3k
0
votes
1
reply
912
views
News:
Google Summer of Code 2020 announced for mentor organisations
internship
GSoC
updated 3 days ago by
Ram
39k • written 3.5 years ago by
Emily
23k
1
vote
1
reply
755
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 2 days ago by
Ram
39k • written 3.3 years ago by
Strand NGS
▴ 40
3
votes
1
reply
1.1k
views
News:
UniProt: Change of FT and CC section in UniProtKB text format
uniprot
protein
updated 6 days ago by
Ram
39k • written 3.7 years ago by
Elisabeth Gasteiger
★ 2.2k
2
votes
1
reply
2.4k
views
News:
RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R
RNA-Seq
Bioconductor
updated 1 day ago by
Ram
39k • written 3.2 years ago by
carlopecoraro2
★ 2.3k
0
votes
1
reply
1.2k
views
News:
Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS
DNA-seq
Workshop
updated 1 hour ago by
Ram
39k • written 3.1 years ago by
David Langenberger
9.9k
0
votes
1
reply
983
views
News:
Course 16S Metabarcoding in Berlin (March 2020)
R
Qiime2
Metabarcoding
updated 3 days ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
419
views
News:
ONLINE COURSE-Advanced programming in R
R
updated 4 hours ago by
Ram
39k • written 3.2 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
653
views
News:
Training in Rosetta for Molecular Modeling and Design @NIH
Molecular-Design
Modeling
RNA-Seq
Biomedical
updated 6 days ago by
Ram
39k • written 3.8 years ago by
AABI
▴ 130
2
votes
0
replies
591
views
News:
Population Genomics course
R
SNP
next-gen
updated 2 days ago by
Ram
39k • written 3.3 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
503
views
News:
The precisionFDA BioCompute Object App-a-thon submission period ends in 1 week!
app-a-thon
biocompute
precisionFDA
updated 3 days ago by
Ram
39k • written 3.7 years ago by
hollystephens723
▴ 70
0
votes
0
replies
539
views
News:
Ensembl reduced functionality - Monday 20th January
Service
Ensembl
updated 2 days ago by
Ram
39k • written 3.4 years ago by
Ben_Ensembl
★ 2.2k
0
votes
0
replies
402
views
News:
New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 32 minutes ago by
Ram
39k • written 3.1 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
645
views
News:
EMBL Course: Circulating Tumour DNA in Clinical Applications
Liquid-biopsy
Clinical-application
Tumour-cells
updated 3 days ago by
Ram
39k • written 3.6 years ago by
EMBL Events
• 0
0
votes
0
replies
627
views
News:
Training in Computational Drug Design and Discovery @NIH,USA, January 21-24, 2020
Drug-design
RNA-Seq
genomics
updated 3 days ago by
Ram
39k • written 3.5 years ago by
AABI
▴ 130
0
votes
0
replies
639
views
News:
Course - Metabolomics: from study design to data analysis
Metabolomics
R
Bioconductor
updated 4 days ago by
Ram
39k • written 3.7 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
657
views
News:
TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK
PRSice
GWAS
R
Genome
updated 3 hours ago by
Ram
39k • written 3.1 years ago by
Transmitting Science communication
• 0
1
vote
0
replies
566
views
News:
Cellosaurus release 33 is available
knowledgebase
cell-line
updated 3 days ago by
Ram
39k • written 3.5 years ago by
Amos Bairoch
▴ 110
2
votes
0
replies
525
views
News:
Tailored online courses in R
Machine-Learning
R
tidyverse
updated 4 hours ago by
Ram
39k • written 3.1 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
790
views
News:
NGS Data Analysis Training for Researchers - March 25-27 in Munich
NGS
data-analysis
training
workshop
updated 2 days ago by
Ram
39k • written 3.4 years ago by
David Langenberger
9.9k
0
votes
0
replies
598
views
News:
BioC2020: mark your calendars!
conference
Bioc2020
updated 3 days ago by
Ram
39k • written 3.5 years ago by
venu
7.0k
0
votes
0
replies
528
views
News:
Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis
Genotype
Variant-calling
next-gen
updated 53 minutes ago by
Ram
39k • written 3.1 years ago by
AABI
▴ 130
1
vote
0
replies
701
views
News:
Free Ensembl browser and REST API workshops: Hinxton, Cambridge, UK, 15/16 October 2019
training-course
Ensembl
workshop
updated 6 days ago by
Ram
39k • written 3.7 years ago by
Astrid_Ensembl
▴ 330
0
votes
0
replies
555
views
News:
R courses in Berlin
R
updated 3 days ago by
Ram
39k • written 3.6 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
556
views
News:
Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics
RNA-Seq
Modeling
next-gen
updated 20 minutes ago by
Ram
39k • written 3.1 years ago by
AABI
▴ 130
2
votes
0
replies
494
views
News:
2-day Nextflow training course in Berlin
workflow
nextflow
updated 2 days ago by
Ram
39k • written 3.4 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
462
views
News:
Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly
RNA-Seq
next-gen-sequencing
updated just now by
Ram
39k • written 3.0 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
682
views
News:
Training in Bioinformatics for Beginners @NIH
sequence-analysis
omics
training
updated 3 days ago by
Ram
39k • written 3.6 years ago by
AABI
▴ 130
0
votes
0
replies
672
views
News:
Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
sequence
RNA-Seq
training
updated 3 days ago by
Ram
39k • written 3.6 years ago by
AABI
▴ 130
0
votes
0
replies
704
views
News:
EMBL PhD programme applications open
phd
embl
updated 6 days ago by
Ram
39k • written 3.7 years ago by
Emily
23k
2
votes
0
replies
630
views
News:
Eukaryotic Metabarcoding course in Berlin. Last places left.
JAMP
R
metabarcoding
Obitools
updated 3 days ago by
Ram
39k • written 3.4 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
661
views
News:
Interested in learning more about Bayesian Statistics?
Bayesian-Statistics
R
Stan
updated 3 days ago by
Ram
39k • written 3.5 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
614
views
News:
Course in Berlin: Data visualization IN R with ggplot2
dataviz
R
ggplot2
tidyverse
updated 3 days ago by
Ram
39k • written 3.6 years ago by
carlopecoraro2
★ 2.3k
2
votes
0
replies
1.1k
views
News:
Introduction to genome-wide association studies (GWAS)
Unix
GWAS
R
updated 2 days ago by
Ram
39k • written 3.4 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
567
views
News:
Comparative Genomics Workshop . registration deadline
assembly
Pacbio
updated 6 days ago by
Ram
39k • written 3.8 years ago by
carlopecoraro2
★ 2.3k
0
votes
0
replies
284
views
News:
Bioinformatics courses in February
Genomics
Bioinformatics-Training
updated 3 days ago by
Ram
39k • written 4 months ago by
carlopecoraro2
★ 2.3k
158 results • Page
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A: How to obtain transcript level TPM using stringtie?
A: How to obtain transcript level TPM using stringtie?
relationship between PI_HAT and --king-cutoff coefficient?
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
Answer: ChatGPT optimized for bioinformatics questions
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
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Answer: Why some insertions are symbolic in ALT column?
by
LChart
2.7k
I don't know specifically about Sniffles2; but for other callers this typically means that the insert sequence itself couldn't be assembled…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Vincent Laufer
★ 3.0k
interesting answer, do you have any source that discusses this where i could read more?
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Vincent Laufer
★ 3.0k
interesting answer and i like the reference to tile.DB. with regard to 2. - this is the only place you and i might differ .. i think the p…
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
by
LChart
2.7k
As a bit of a history: the VCF (and to an extent even the .bam format) came out of the research groups working on the 1000G project because…
Comment: BED files
by
lela2314
• 0
I am trying this: `bedtools intersect -a enhancer_liver2.bed -b chip_tfbs.bed -wb` because the transcription factor is in my second bed …
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
GenoMax
130k
ChatGPT said > VCF files can be extended to represent pangenome variant data by > including information specific to each haplotype or gen…
Answer: The .vcf format: is there a file format better suited for the era of pangenomics
by
Matthias Zepper
3.7k
[I can't help but be reminded of this XKCD strip][1]. 1. Disagree. In my humble opinion, there is no such thing as an ideal data format,…
Answer: ChatGPT optimized for bioinformatics questions
by
Vincent Laufer
★ 3.0k
@358a1a47 This is really timely work - two thoughts for consideration: 1) I think that a major focus here should be on devising metr…
Answer: ChatGPT optimized for bioinformatics questions
by
Ram
39k
I tested it again today, on a bit of a meta level. I asked it for its opinion of biostars and it assumed I had some random context and went…
Comment: BED files
by
Pierre Lindenbaum
155k
have a look at options `-wa` and `-wb`
Comment: BED files
by
lela2314
• 0
That is what I am doing but it does not seem to be working. I am doing: bedtools intersect -a enhancer_muscle2.bed -b chip_tfbs.bed > …
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Pierre Lindenbaum
155k
shameless LLM : https://ai.tinybio.cloud/chat > The statement "VCF is the ideal file format for genomic information; no better file format…
Comment: BED files
by
Pierre Lindenbaum
155k
> I have been trying to solve what did you try ? (... and your answer will contain `bedtools intersect`)
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Vincent Laufer
★ 3.0k
@ram - this was as bit of a dirty tactic on my part: I stated it in the extreme to provoke disagreement. I agree with you - the irony is, d…
Comment: The .vcf format: is there a file format better suited for the era of pangenomics
by
Ram
39k
> .vcf is the ideal file format for genomic information; no better file format can be conceived whether in the era of singular linear refer…
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