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News: Dublin - Software Carpentry In The Cloud Bootcamp
python cloud
updated 26 days ago by 38k • written 10.6 years ago by 2.3k
0
votes
5
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1.8k
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News: Ashg 2012 Biostar Meetup
ASHG
updated 24 days ago by 38k • written 10.4 years ago by 12k
0
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0
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1.7k
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News: Workshop: Programming For Evolutionary Biology (March 21St – April 6Th 2014)
ngs
updated 18 days ago by 38k • written 9.3 years ago by 9.9k
1
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1
reply
1.7k
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News: 2013 Gmod Summer School - Now Accepting Applications!
galaxy
updated 23 days ago by 38k • written 9.9 years ago by ▴ 280
6
votes
1
reply
1.7k
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News: Contest: Antibody Marathon Match Problem: ABCSpeedup
contest
updated 5 days ago by 38k • written 8.2 years ago by 153k
3
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0
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1.7k
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News: Dnanexus Is Giving Away 1 Free Agbt 4-Day Badge
next-gen conference
updated 24 days ago by 38k • written 10.2 years ago by ▴ 30
2
votes
1
reply
1.7k
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News: Structure viewer for Ebola virus proteins
ebola structure
updated 10 days ago by 38k • written 8.4 years ago by ▴ 260
2
votes
4
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1.7k
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News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 19 days ago by 38k • written 9.5 years ago by ★ 2.3k
7
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0
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1.7k
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News: Us Ethics Panel Reports On Dna Sequencing And Privacy
next-gen
updated 24 days ago by 38k • written 10.4 years ago by 11k
1
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0
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1.7k
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News: Gatk Workshop Oct 21-22 To Coincide With Ashg Conference
conference gatk
updated 20 days ago by 38k • written 9.6 years ago by ★ 1.2k
5
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1
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1.6k
views
News: Google Joins The Global Alliance For Genomics And Health
genomics
updated 16 days ago by 38k • written 9.1 years ago by 153k
1
vote
1
reply
1.6k
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News: Article: Crowdfunding Genomics And Bioinformatics
crowdfunding
updated 18 days ago by 38k • written 9.4 years ago by 8.2k
1
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0
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1.6k
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News: Gatk Workshop Survey
gatk
updated 27 days ago by 38k • written 10.8 years ago by ★ 1.2k
6
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2
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1.6k
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News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 24 days ago by 38k • written 10.3 years ago by 11k
0
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0
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1.6k
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News: Project Management Tools for Bioinformaticians and Service Providers
Quotation-software LIMS Project-management
updated 6 days ago by 38k • written 8.3 years ago by ▴ 640
4
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0
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1.6k
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News: Iscb Wikipedia Competition 2013
wikipedia
updated 20 days ago by 38k • written 9.6 years ago by ★ 2.0k
1
vote
1
reply
1.6k
views
News: Igb Service Interruption - Backup Site Address
genome-browser RNA-seq
updated 18 days ago by 38k • written 9.4 years ago by ★ 2.3k
2
votes
1
reply
1.6k
views
News: Us Researchers: Help Influence Stem Education With New Nsf Strategies (Deadline Next Tuesday)
education genomics
updated 17 days ago by 38k • written 9.1 years ago by 11k
2
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0
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1.5k
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News: Acute Myeloid Leukemia Outcome Prediction Challenge
prediction cancer
updated 13 days ago by 38k • written 8.8 years ago by 11k
4
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0
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1.4k
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News: $650M gift to Broad seeks to propel (Genomics based ) psychiatric research
sequencing
updated 13 days ago by 38k • written 8.7 years ago by ★ 5.2k
0
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2
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1.4k
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News: M.Phil Program in Bioinformatics
education career
updated 2 days ago by 38k • written 7.4 years ago by • 0
3
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0
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1.4k
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News: Bioconductor Conference, July 31 - Aug 1, 2014, Boston
bioconductor
updated 13 days ago by 38k • written 8.8 years ago by 26k
4
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4
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1.4k
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News: VCFclin working group
vcfclin
updated 13 days ago by 38k • written 8.9 years ago by ▴ 30
3
votes
1
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1.4k
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News: Frederick Sanger ( 1918 - 2013 )
sanger-institute
updated 18 days ago by 38k • written 9.3 years ago by 153k
4
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0
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1.4k
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News: Helen Berman Wins The 2013 Delano Award For Computational Biosciences
delano-award
updated 24 days ago by 38k • written 10.0 years ago by 18k
1
vote
0
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1.3k
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News: What is new in Ensembl: Free webinar
Ensembl genome-browser
updated 10 days ago by 38k • written 8.4 years ago by ★ 5.2k
0
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0
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1.3k
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News: Free Ensembl webinar
Ensembl
updated 10 days ago by 38k • written 8.4 years ago by 23k
1
vote
0
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1.2k
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News: Galaxy Group At G+
galaxy
updated 23 days ago by 38k • written 9.8 years ago by ★ 1.3k
1
vote
0
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1.2k
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News: Day 1 Highlights of SFAF 2014 Meeting
Sequencing
updated 13 days ago by 38k • written 8.8 years ago by ▴ 640
1
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0
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930
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News: National Advisory Council for Human Genome Research, 71st meeting--live Monday morning
nhgri
updated 13 days ago by 38k • written 8.8 years ago by 11k
0
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0
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801
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News: Training in genomics workflows for computational novices
bash training workshop cloud
updated 5 days ago by 38k • written 3.8 years ago by • 0
0
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0
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666
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News: Managing single cell transcriptomics: Course at EMBL-EBI, July 3-5
single-cell RNA-Seq
updated 5 days ago by 38k • written 3.9 years ago by • 0
8
votes
2
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648
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News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 2 days ago by 38k • written 3.2 years ago by 9.9k
10
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4
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558
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News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 3 days ago by ▴ 30 • written 5 weeks ago by 9.9k
0
votes
0
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548
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News: FINAL CALL :: Online Course - A Practical Introduction to NGS Data Analysis (July 14-16, 2021)
NGS workshop
updated 2 days ago by 38k • written 21 months ago by 9.9k
1
vote
1
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464
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News: QC for Next Generation Sequencing
NGS QC
updated 10 days ago by 38k • written 17 months ago by • 0
0
votes
0
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444
views
News: Live webinar (Feb 12 at 12PM Eastern): variant calling for bench scientists
variant-calling wgs wes
updated 5 days ago by 38k • written 3.1 years ago by • 0
5
votes
3
replies
340
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 4 hours ago by ▴ 220 • written 4 weeks ago by 3.3k
0
votes
2
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267
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News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 2 days ago by 38k • written 2 days ago by ★ 2.3k
0
votes
0
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263
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News: Course - Analysis of PROKARYOTIC PANGENOMES
Genomics Pangenomes
updated 27 days ago by 38k • written 29 days ago by ★ 2.3k
1
vote
1
reply
225
views
News: Sign-ups for the St. Jude KIDS23 BioHackathon (May 3-5th) open through March 15th!
stjude hackathon
5 days ago by jared.andrews07 ★ 14k
0
votes
0
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198
views
News: Introduction to GWAS course in June
GWAS R
updated 12 days ago by 38k • written 5 weeks ago by ★ 2.3k
0
votes
0
replies
188
views
News: course MULTIVARIATE DATA ANALYSIS WITH R AND VEGAN
Vegan MULTIVARIATEDATAANALYSIS Statistics R
23 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
188
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
updated 20 days ago by 38k • written 20 days ago by ▴ 730
1
vote
0
replies
187
views
News: Advanced Bayesian statistics in R course
Statistics RegressionModeling Bayesian R
17 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
178
views
News: Virtual Single Cell RNA-seq Workshop
single genomics cell expression rna-seq workshop gene
16 days ago by mia.nahom ▴ 10
0
votes
0
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149
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News: course - single-cell RNAseq with R/Bioconductor
Bioconductor single-cell genomics RNAseq
updated 12 days ago by 38k • written 25 days ago by ★ 2.3k
1
vote
0
replies
148
views
News: Course - BIOINFORMATIC ANALYSIS OF TRANSPOSABLE ELEMENTS
Transposable-Elements TE Genome-Assembly
updated 3 days ago by 38k • written 7 days ago by ★ 2.3k
0
votes
0
replies
129
views
News: Course - GENERALIZED LINEAR MODELS in R
GLMs R GeneralisedLinearModels
12 days ago by carlopecoraro2 ★ 2.3k
1
vote
0
replies
127
views
News: Summer School in Bioinformatics
Genomics Docker RNA-seq
updated 3 days ago by 38k • written 3 days ago by ★ 2.3k
152 results • Page 3 of 4
Recent Votes
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
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Recent Replies
Answer: how to get pfam id of proteins belonging to a particular family along with seque by GenoMax 126k
Visit: https://www.uniprot.org/uniprotkb?query=(taxonomy_id:9606) Click on `customize columns`. Search with keyword `pfam` and check the…
Comment: how to get pfam id of proteins belonging to a particular family along with seque by Pierre Lindenbaum 153k
use the data in the download section ? $ wget -qO - "https://ftp.ebi.ac.uk/pub/databases/interpro/current_release/protein2ipr.dat.gz" …
Comment: Problem in converting SAM to BAM file by DROP SEQ by benformatics 3.4k
i think picard is expecting read groups. you may need to add them: https://gatk.broadinstitute.org/hc/en-us/articles/360037226472-AddOrRepl…
Comment: samtools idxstats not removing ChrM by benformatics 3.4k
i'm not sure this is doing what you expect? you should try filtering your bam directly and then running idx stats samtools view -h yo…
Comment: samtools idxstats not removing ChrM by Jeremy Leipzig 21k
can we see the output from this? `samtools idxstats chipseq/results/bowtie2/PPARg/PPARg_Input_Rep1_aln_sorted.bam` conversely just as an e…
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
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