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8
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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
24 days ago by David Langenberger 11k
12
votes
2
replies
455
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
19 days ago by David Langenberger 11k
0
votes
0
replies
194
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
3
votes
0
replies
188
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 3 days ago by 43k • written 3 days ago by ▴ 60
0
votes
0
replies
188
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
184
views
News: Online course: Network Analysis in R
NetworkAnalyis R
15 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
178
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 13 days ago by 43k • written 13 days ago by 11k
0
votes
0
replies
178
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 11 days ago by 43k • written 11 days ago by ★ 2.5k
1
vote
0
replies
177
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 21 days ago by 43k • written 23 days ago by ★ 2.5k
0
votes
0
replies
160
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
149
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
28 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
148
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 26 days ago by 43k • written 26 days ago by ★ 2.5k
0
votes
0
replies
145
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 14 days ago by 43k • written 14 days ago by ▴ 380
0
votes
0
replies
134
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 8 days ago by 43k • written 9 days ago by ★ 2.5k
1
vote
0
replies
132
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 18 days ago by 43k • written 18 days ago by ▴ 70
2
votes
0
replies
127
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 18 days ago by 43k • written 18 days ago by ▴ 70
2
votes
0
replies
126
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 18 days ago by 43k • written 18 days ago by ▴ 70
3
votes
0
replies
125
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 6 days ago by 43k • written 6 days ago by ★ 2.5k
0
votes
0
replies
122
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
2
votes
0
replies
121
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 20 days ago by 43k • written 20 days ago by ★ 2.5k
0
votes
0
replies
119
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq variant-calling RNA-seq illumina transcriptomics
updated 4 days ago by 43k • written 5 days ago by 11k
0
votes
0
replies
117
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 5 days ago by 43k • written 5 days ago by ★ 2.5k
2
votes
0
replies
116
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
19 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
87
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
7 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
82
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
11 hours ago by carlopecoraro2 ★ 2.5k
25 results • Page 1 of 1
Recent Votes
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Answer: How to use limma to find differentially expressed genes in response to a continu
Answer: How to use limma to find differentially expressed genes in response to a continu
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Comment: Landmark gene selection in L1000. by GenoMax 141k
Paper referred to in question: https://pubmed.ncbi.nlm.nih.gov/29195078/ > so I want to understand how you reduced the 12063 genes to 978…
Comment: What should I consider as FASTA for dataset? by Nafi • 0
Protein attribute prediction
Comment: Batch effects : ComBat or removebatcheffects (limma package) ? by cwwong13 ▴ 40
@kevin May I know whether your comments and edits were mainly based on the fact that "Previously, [crazy] people had been using the origina…
Comment: Programmatically retrieving positions of protein active site residues by Wayne ★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
Comment: Software to separate reads from different individuals by GenoMax 141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence by Matthias Zepper 4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu by pairedttest ▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by GenoMax 141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
Comment: How should I make kallisto indexes? by dsull ★ 5.9k
We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller? by Medhat 9.7k
"./." in your gVCF files typically indicates a lack of information or uncertainty about the genotype at that particular position. This co…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Fungal ITS2 region (length is really variable so read-through can be an issue)
Answer: Is it possible to bulk download files from GEO repository? by noodle ▴ 570
Also try the NCBI AWS bucket transfer tool. It's extremely convenient, however it's not instantaneous and you need to have a (paid) AWS acc…
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