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8
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News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
23 days ago by David Langenberger 11k
3
votes
2
replies
588
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
29 days ago by Johannes W. Dietrich • 0
12
votes
2
replies
451
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
18 days ago by David Langenberger 11k
0
votes
0
replies
193
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 9 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
185
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 16 days ago by 43k • written 16 days ago by ★ 2.5k
0
votes
0
replies
182
views
News: Online course: Network Analysis in R
NetworkAnalyis R
14 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
177
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 9 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
0
replies
176
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 11 days ago by 43k • written 12 days ago by 11k
1
vote
0
replies
175
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
updated 19 days ago by 43k • written 22 days ago by ★ 2.5k
3
votes
0
replies
151
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 1 day ago by 43k • written 2 days ago by ▴ 60
0
votes
0
replies
147
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
26 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
147
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 24 days ago by 43k • written 25 days ago by ★ 2.5k
0
votes
0
replies
143
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 12 days ago by 43k • written 12 days ago by ▴ 380
0
votes
0
replies
136
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 2 days ago by 43k • written 2 days ago by ★ 2.5k
0
votes
0
replies
132
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 6 days ago by 43k • written 7 days ago by ★ 2.5k
1
vote
0
replies
132
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 16 days ago by 43k • written 17 days ago by ▴ 70
2
votes
0
replies
125
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 16 days ago by 43k • written 17 days ago by ▴ 70
2
votes
0
replies
125
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 16 days ago by 43k • written 17 days ago by ▴ 70
3
votes
0
replies
122
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 4 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
122
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 19 days ago by 43k • written 20 days ago by ★ 2.5k
2
votes
0
replies
119
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 18 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
118
views
News: 8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq variant-calling RNA-seq illumina transcriptomics
updated 2 days ago by 43k • written 3 days ago by 11k
2
votes
0
replies
116
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
18 days ago by Transmitting Science communication ▴ 70
0
votes
0
replies
113
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 3 days ago by 43k • written 4 days ago by ★ 2.5k
0
votes
0
replies
84
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
6 days ago by carlopecoraro2 ★ 2.5k
25 results • Page 1 of 1
Recent Votes
Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
Answer: ChIP-seq datasets: input samples omitted?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
A: Deeptools plotHeatmap - Maintain Order of Input BED file
Comment: NGS forensics: how to know if data is fabricated
Comment: calculate nucleotide diversity from whole-genome-sequence data for individual ge
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Recent Replies
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
Comment: NGS forensics: how to know if data is fabricated by Philipp Bayer 8.3k
While I think this is an interesting case, I've before found cleaned 'raw' data on SRA. It happens: bioinformaticians receive the raw data,…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
1. What does clipped Fastq mean? both forward and reverse reads in the same file? 2. Why would you remove 2000bp contigs? I feel it will gi…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Well, I downloaded both the reads from-[LINK][1]. Thats all i did. Thats the only thing i need to do, right? I'l try spades. [1]: http…
Comment: How to assign cell types after integration in scRNA by Francesco ▴ 10
Thanks for the fast reply.. however i had only partially understood the answer. Is correct saying that low-representation integration and b…
Answer: Can I run cellassign on samples independently if there is batch effect present? by Francesco ▴ 10
Hi! Whenever you do make independent analysis or aggregate data and analyze them, most cell type assignment tools start from raw counts to …
Comment: gvcf joint calling by zihanss • 0
Thanks for your comment, I get it now.
Answer: ChIP-seq datasets: input samples omitted? by ATpoint 82k
In my hands (and from what I know based on many years here) inputs are almost exclusively used during peak calling to correct for loci-spec…
Comment: How to assign cell types after integration in scRNA by ATpoint 82k
No difference here. After all you typically want a label per cluster/group, so either subset to the control condition to do the assignment,…
Comment: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
I found the question and ASK the GPT4 turbo
Answer: Differential Expression using Isoseq-supplemented reference transcriptome by gaoanwei • 0
Your approach seems reasonable and well-informed, though it's perhaps less customary in the field, which could be why you haven't found pap…
Answer: How many reads for WGS Sequencing? by Mensur Dlakic ★ 27k
It takes 29 seconds to assemble this genome (20 CPUs) with the following statistics: 135 contigs, total 2821177 bp, min 200 bp, max …
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 530
IMO (and unfortunately) there needs to be an effort to develop these algorithms.
Comment: gvcf joint calling by Jeremy Leipzig 22k
the samples that are `./.` have no coverage (or not enough to call a genotype) and the `0/0` are homozygous reference
Answer: How many reads for WGS Sequencing? by GenoMax 141k
Did you download the complete dataset available from ENA/NCBI SRA? This is an older dataset (from 2012) with a total of 1146212 reads and 1…
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