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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
97
views
Analysis of the gene family of a genome.
Genome
gene-family
updated 9 days ago by
Ram
43k • written 9 days ago by
sansan_96
▴ 80
0
votes
0
replies
104
views
File with NCBI summary or Uniprot description
annotation
visualisation
NCBI
Uniprot
RNA
updated 8 days ago by
Ram
43k • written 9 days ago by
Amélie
• 0
0
votes
0
replies
205
views
Meta analysis of two GWAS summary statistics: one study is case-control and the other is quantitative
GWAS
Meta-analysis
updated 9 days ago by
Ram
43k • written 9 days ago by
Oak
▴ 10
1
vote
3
replies
2.5k
views
Problem to remove subset of patients with plink
plink
PED
updated 9 days ago by
chrchang523
10k • written 6.1 years ago by
Ginevra
▴ 10
1
vote
8
replies
426
views
Downsampling fastq file
downsample
fastq
1 day ago by
marco.barr
▴ 80
0
votes
1
reply
141
views
tbtool
tbtool
updated 9 days ago by
Ram
43k • written 9 days ago by
Raman
• 0
0
votes
10
replies
474
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 1 day ago by
i.sudbery
19k • written 9 days ago by
Patadu94
• 0
0
votes
1
reply
134
views
Displaced fragment length distribution in ATAC-seq
ATAC-seq
nucleosome
fragment
updated 9 days ago by
ATpoint
82k • written 9 days ago by
enanoide
• 0
0
votes
0
replies
92
views
Help with finding conferences in immuno-informatics/virology
virology
conferences
immunology
9 days ago by
manaswwm
▴ 510
0
votes
0
replies
82
views
Filtering most similarly expressed gene (contrary to differential expression gene) with NOISeq?
NOIseq
8 days ago by
alifafiq1
• 0
0
votes
0
replies
88
views
How to get somatic variation based on RNA-seq data?
RNA-seq
variation
somatic
9 days ago by
feather-W
• 0
2
votes
4
replies
307
views
interpretartion of a vcf file
calling
genotype
ONT
variant
diploid
7 days ago by
samuelkalandarov2002
▴ 10
0
votes
0
replies
88
views
Annotating single cell data automatically
cell
annotation
single
9 days ago by
Gerard
• 0
0
votes
1
reply
170
views
RNA-seq bacteria contamination
RNA-seq
updated 9 days ago by
GenoMax
141k • written 9 days ago by
sh
• 0
0
votes
0
replies
79
views
Imputation advice
imputation
9 days ago by
kl
▴ 10
0
votes
0
replies
97
views
Trimming best practices for SNP calling
trimming
SNP
trimmomatic
9 days ago by
Enrique
• 0
0
votes
0
replies
79
views
Correct way of reducing predictive model complexity
lasso
glmnet
predictvemodeling
regression
9 days ago by
sativus
▴ 20
0
votes
0
replies
86
views
Difficulties getting **the adjacency file** necessary for **aracne2regulon** function.
VIPER
MARINA
ARACNe
9 days ago by
Biostars2200
• 0
0
votes
0
replies
138
views
CIRIquant: ValueError: file has no sequences defined (mode='rb') - is it SAM/BAM format? Consider opening with check_sq=False
Ciriquant
updated 9 days ago by
Carlo Yague
8.7k • written 9 days ago by
Atul K.
• 0
2
votes
5
replies
477
views
Marking duplicates using UMIs
Deduplication
UMI
updated 9 days ago by
i.sudbery
19k • written 11 days ago by
Lipika
• 0
0
votes
0
replies
144
views
How to extract the mutations specific to cancer after variant annotation
variant-annotation
updated 10 days ago by
Ram
43k • written 10 days ago by
sainavyav22
• 0
0
votes
0
replies
146
views
Bacterial genome alignment with mauve
Bacteria
mauve
genome
11 days ago by
rthapa
▴ 90
0
votes
0
replies
140
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
11 days ago by
Mamatha Y S
• 0
0
votes
2
replies
280
views
bam merging for archaic samples
samtools
bam
updated 10 days ago by
Ram
43k • written 11 days ago by
Matteo Ungaro
▴ 100
1
vote
0
replies
545
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
11 days ago by
mathavanbioinfo
▴ 90
0
votes
0
replies
224
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
11 days ago by
abhishekghadge
• 0
2
votes
5
replies
708
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 11 days ago by
Jesse
▴ 740 • written 12 days ago by
Ann
★ 2.4k
0
votes
0
replies
193
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 12 days ago by
Ram
43k • written 12 days ago by
mja
• 0
0
votes
0
replies
192
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
12 days ago by
Nitin
• 0
0
votes
0
replies
186
views
Chemical structure validation
structure
cap
validation
metabolite
12 days ago by
Rodolfo Adrián
• 0
0
votes
1
reply
272
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 12 days ago by
GenoMax
141k • written 12 days ago by
bioyas
▴ 10
0
votes
0
replies
210
views
Copy number variation plot
Copy-number-variation
genomics
updated 12 days ago by
Ram
43k • written 12 days ago by
Emmi
• 0
0
votes
0
replies
186
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
12 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
290
views
Could you please assist in identifying this cluster?
single-cell
updated 12 days ago by
Ram
43k • written 12 days ago by
Kazo
▴ 10
0
votes
0
replies
205
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 12 days ago by
Ram
43k • written 12 days ago by
Dinmukhamed
• 0
0
votes
0
replies
199
views
miRDeep2: How to get the read counts
mirdeep2
12 days ago by
Atul K.
• 0
0
votes
0
replies
205
views
Lncipedia GTF file error
Proteomics
updated 12 days ago by
Ram
43k • written 12 days ago by
atharvakarkare14
▴ 20
3
votes
3
replies
487
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 11 days ago by
swbarnes2
14k • written 12 days ago by
noodle
▴ 580
0
votes
2
replies
560
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
13 days ago by
航太郎
• 0
0
votes
0
replies
220
views
create genewise sync file in popoolation
popoolation
updated 13 days ago by
GenoMax
141k • written 13 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
394
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
12 days ago by
Ashok
• 0
0
votes
2
replies
431
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
12 days ago by
Ashok
• 0
0
votes
0
replies
221
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 13 days ago by
Ram
43k • written 13 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
439
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
12 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
213
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
9 days ago by
Javier
• 0
0
votes
0
replies
187
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
13 days ago by
enferdeflame
• 0
1
vote
1
reply
433
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 10 days ago by
Gordon Smyth
★ 7.1k • written 13 days ago by
Chris
▴ 260
0
votes
1
reply
408
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 13 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
167
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 13 days ago by
Ram
43k • written 13 days ago by
bioinfo223
▴ 10
0
votes
0
replies
187
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
13 days ago by
P.
• 0
1,000 results • Page
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Recent Votes
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Recent Replies
Comment: Post-imputation plot
by
kl
▴ 10
Ok yes I think my thought was that given these errors, I could remove the mismatches and flip the alleles which seem to need flipping based…
Comment: Bacterial plasmid analysis
by
nicole.kavanagh
• 0
I think I will perhaps use their predominant PlasmidFinder type to group plasmids together and create separate core phylogenies for each as…
Comment: Bacterial plasmid analysis
by
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141k
Can you classify the plasmids based on function (resistance genes they are carrying or some other criteria). Sizes above are indicating a w…
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82k
Initially posted here https://support.bioconductor.org/p/9158036/ where I suggested to put code and data and noted that GEOquery returns ar…
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LChart
3.9k
I agree that some need to be flipped (A/T and C/G where your panel frequency is 1 - ref panel frequency). There are other variants which yo…
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Are those 20% unaligned reads coming after hyper-editing detection?
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I think your best bet would be to use annotation mapping. You can use the features of your clusters in group 1 and apply them to group 2 to…
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Adam
▴ 30
> when I put in the dataset, I am not able to run it for DEG analysis because system asks me to remove the first column which is of gene na…
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by
nicole.kavanagh
• 0
Thank you so much for your quick response, I have been searching scientific papers for about a week but have failed to come up with a reaso…
Comment: Bacterial plasmid analysis
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GenoMax
141k
> however I'm not sure this would be appropriate in my case as the plasmid sequences are obviously much more diverse and vary in size Can…
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I'm sure someone could find a more elegant solution using `stringr::str_wrap`, but for a one-time solution I did this: # my results of…
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You could edit the SAM file but I wonder if this problem is present in your original fastq data file so if not inconvenient do the alignmen…
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Thank you! how would I correct that?
Comment: DESeq2 processing problems
by
Ram
43k
This is an open science community, not a place to write an email to Michael Love. Please address the entire community.
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