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1,000 results • Page
5 of 20
Sort: Rank
Rank
Views
Votes
Replies
2
votes
5
replies
762
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 18 days ago by
Jesse
▴ 760 • written 19 days ago by
Ann
★ 2.4k
0
votes
0
replies
203
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 19 days ago by
Ram
43k • written 19 days ago by
mja
• 0
0
votes
0
replies
204
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
19 days ago by
Nitin
• 0
0
votes
0
replies
197
views
Chemical structure validation
structure
cap
validation
metabolite
19 days ago by
Rodolfo Adrián
• 0
0
votes
1
reply
294
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 19 days ago by
GenoMax
142k • written 19 days ago by
bioyas
▴ 10
0
votes
0
replies
223
views
Copy number variation plot
Copy-number-variation
genomics
updated 19 days ago by
Ram
43k • written 19 days ago by
Emmi
• 0
0
votes
0
replies
199
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
19 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
311
views
Could you please assist in identifying this cluster?
single-cell
updated 19 days ago by
Ram
43k • written 19 days ago by
carolofharvest
▴ 40
0
votes
0
replies
219
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 19 days ago by
Ram
43k • written 20 days ago by
Dinmukhamed
• 0
0
votes
0
replies
213
views
miRDeep2: How to get the read counts
mirdeep2
20 days ago by
Atul K.
• 0
0
votes
0
replies
216
views
Lncipedia GTF file error
Proteomics
updated 19 days ago by
Ram
43k • written 20 days ago by
atharvakarkare14
▴ 30
3
votes
3
replies
535
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 19 days ago by
swbarnes2
14k • written 20 days ago by
noodle
▴ 580
0
votes
2
replies
578
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
20 days ago by
航太郎
• 0
0
votes
0
replies
230
views
create genewise sync file in popoolation
popoolation
updated 20 days ago by
GenoMax
142k • written 20 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
411
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
20 days ago by
Ashok
• 0
0
votes
2
replies
454
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
20 days ago by
Ashok
• 0
0
votes
0
replies
229
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 20 days ago by
Ram
43k • written 20 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
460
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
19 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
222
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
16 days ago by
Javier
• 0
0
votes
0
replies
202
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
20 days ago by
enferdeflame
• 0
1
vote
1
reply
446
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 18 days ago by
Gordon Smyth
★ 7.1k • written 20 days ago by
Chris
▴ 280
0
votes
1
reply
415
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 20 days ago by
Ram
43k • written 20 months ago by
Muhammad
• 0
0
votes
0
replies
171
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 20 days ago by
Ram
43k • written 21 days ago by
bioinfo223
▴ 10
0
votes
0
replies
193
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
21 days ago by
P.
• 0
0
votes
0
replies
184
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
21 days ago by
ekirsch
• 0
1
vote
1
reply
499
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
19 days ago by
renan.igor
• 0
0
votes
0
replies
206
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
21 days ago by
synat.keam
▴ 100
0
votes
1
reply
300
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 21 days ago by
GenoMax
142k • written 21 days ago by
ycts
• 0
0
votes
4
replies
637
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
20 days ago by
Kai Xin
• 0
1
vote
1
reply
251
views
Retrieve a % coverage for each transcript
RNA-seq
updated 21 days ago by
Ram
43k • written 21 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
417
views
How can I solve this error?
metal
21 days ago by
22211020193
• 0
0
votes
0
replies
182
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 21 days ago by
GenoMax
142k • written 21 days ago by
srimmer
• 0
1
vote
2
replies
312
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 21 days ago by
Ram
43k • written 21 days ago by
aniigodwinn
• 0
0
votes
0
replies
368
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
21 days ago by
Ronin
• 0
2
votes
7
replies
923
views
Removing duplicates
duplicates
ONT
minimap2
updated 20 days ago by
noodle
▴ 580 • written 22 days ago by
quentinperriere
• 0
0
votes
1
reply
224
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 22 days ago by
DKA
▴ 40 • written 22 days ago by
james.melhorn
• 0
0
votes
1
reply
217
views
Freyja plot error
Freyja
updated 21 days ago by
Ram
43k • written 22 days ago by
Adyasha
• 0
0
votes
0
replies
176
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
22 days ago by
chemokine-1
▴ 10
0
votes
4
replies
561
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
21 days ago by
feather-W
• 0
0
votes
2
replies
289
views
Bedmethyl file format
bedmethyl
methylation
updated 22 days ago by
GenoMax
142k • written 22 days ago by
njornet
▴ 20
0
votes
0
replies
190
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
22 days ago by
Ali
• 0
2
votes
4
replies
361
views
SnpEff annotates coding duplication as intronic?
snpeff
22 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
288
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
22 days ago by
mropri
▴ 150
0
votes
0
replies
163
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
22 days ago by
shasabhi1
• 0
0
votes
0
replies
151
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
22 days ago by
Nishat
• 0
0
votes
0
replies
181
views
what exactly is a k-mer table (remora)?
remora
basecall
22 days ago by
anne
• 0
1
vote
1
reply
202
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 22 days ago by
dsull
★ 6.0k • written 22 days ago by
niruf
• 0
0
votes
0
replies
157
views
GWAS Phenotypes
GWAS
23 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
357
views
GSEA analysis in R
GSEA
R
Arabidopsis
21 days ago by
Sudip
• 0
0
votes
0
replies
132
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
23 days ago by
QX
• 0
1,000 results • Page
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Recent Votes
Answer: Nextflow: how to get the process work dir, within the process
RNA-seq: Explain STAR quantMode geneCounts values
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
Comment: Help with Biopython for Beginner
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
Comment: Importing a fastq file
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rj.rezwan
• 0
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Pierre Lindenbaum
161k
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Albert
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GenoMax
142k
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Gordon Smyth
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kacollier
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Recent Replies
Answer: Server or aws cloud- which one is better for gatk pipeline
by
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142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
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by
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54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
> could you please explain what the collate does? http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data
by
Jaïr
• 0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Lila M
★ 1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
by
Pierre Lindenbaum
161k
faster use samtools collate+ fastq samtools collate -uOn128 in.bam TMPDIR | samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R…
Comment: Nextflow: how to get the process work dir, within the process
by
ScottDansk
▴ 10
legend thank you so much!
Answer: Nextflow: how to get the process work dir, within the process
by
Pierre Lindenbaum
161k
``` écho \${PWD} ``` <!-- where is Brian Brian is in the kitchen -->
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
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19k
What is the output of `samtools flagstat`?
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Hi, just a question, were you able to find a way to get it to work locally? My understanding from looking around seems to be at least so fa…
Comment: Problem with Seurat package in PercentageFeatureSet function
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Yoosef
▴ 60
Thanks a lot for your response. Today, I finally understood what my problem was. I have used CreateAssayObject function, while I should ha…
Comment: Correlation Analysis
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there is only one value of methylation and expression per gene. I did perform corr(gene_corr$methylation_values, gene_corr$expression_value…
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▴ 100
from the documentation it seems that it reports limits for the value of log2 fold-change in an absolute sense. FCcutoff: Cut-off for…
Comment: Importing a fastq file
by
oumo
• 0
The fastq file is in my local disk, and I want to upload it to Ubuntu
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