updated 20 hours ago by
alanh
▴
170
•
written 7.1 years ago by
jonessara770
▴
240
38
votes
12
replies
31k
views
9 follow
6
votes
4
replies
294
views
4
votes
9
replies
423
views
23 hours ago by
Gabriel R.
★
2.9k
3
votes
4
replies
286
views
1
vote
15
replies
665
views
1
vote
1
reply
99
views
updated 3 hours ago by
Gordon Smyth
★
7.2k
•
written 14 hours ago by
marineandriot
•
0
1
vote
4
replies
282
views
1
vote
8
replies
430
views
updated 8 hours ago by
Alex Reynolds
35k
•
written 4 days ago by
ntsopoul
▴
60
1
vote
5
replies
299
views
0
votes
7
replies
4.3k
views
updated 8 hours ago by
aidangcruickshank
▴
10
•
written 3.7 years ago by
rthapa
▴
90
0
votes
4
replies
257
views
4 hours ago by
mavy
▴
10
0
votes
4
replies
252
views
updated 3 hours ago by
txema.heredia
▴
130
•
written 1 day ago by
Ngrin
•
0
0
votes
1
reply
22
views
0
votes
5
replies
248
views
0
votes
0
replies
89
views
20 hours ago by
qudrat.nii
▴
10
0
votes
0
replies
67
views
18 hours ago by
kilcdincer
▴
10
0
votes
2
replies
163
views
0
votes
6
replies
266
views
15 hours ago by
hannes.bongartz
•
0
0
votes
2
replies
151
views
0
votes
0
replies
65
views
0
votes
1
reply
128
views
0
votes
0
replies
50
views
Recent Votes
Recent Locations •
All
Machhagan, 2 minutes ago
Pakistan, 3 minutes ago
Germany, 4 minutes ago
Turkey, 6 minutes ago
France, 8 minutes ago
Portugal, 9 minutes ago
Cambridge, MA, 11 minutes ago
Recent Awards •
All
Popular Question to
finswimmer
16k
Popular Question to
Ezequiel
•
0
Popular Question to
alanh
▴
170
Popular Question to
ashkan
▴
160
Recent Replies
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★
7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167.
Our resul…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴
130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴
10
Thank you so much for your response . Really appreciate it.
I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
•
0
i have the same error, i used high performance computer, here is my code to set memory.
srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴
10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
•
0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips.
Thank you
Answer: GG Sankey plot
by
bk11
★
2.5k
You need to change your data table into a 'long' format. You can do something like this-
GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴
60
I use Trim Galore which automatically recognizes adaptors.
https://github.com/FelixKrueger/TrimGalore
Here is the script I am using for…
Answer: Trimming tool
by
GenoMax
142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Traffic: 1318 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6