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116 results • Page
2 of 3
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12
votes
5
replies
1.8k
views
Tutorial:
FASTA file split
fasta
updated 14 days ago by
Ram
38k • written 2.8 years ago by
Juke34
7.8k
10
votes
5
replies
18k
views
Tutorial:
Y-DNA and mtDNA Haplogroup Predictor
haplogroup
updated 14 days ago by
Ram
38k • written 4.7 years ago by
Shicheng Guo
★ 9.3k
15
votes
5
replies
11k
views
6 follow
Tutorial:
Easy way to do GO enrichment in R
enrichr
RNA-Seq
gene
R
updated 19 days ago by
Ram
38k • written 5.3 years ago by
ahmad mousavi
▴ 740
29
votes
5
replies
5.9k
views
Tutorial:
Gnu Parallel Tutorial
parallel
gnu-parallel
updated 29 days ago by
Ram
38k • written 9.5 years ago by
ole.tange
★ 4.3k
28
votes
4
replies
3.7k
views
Tutorial:
Modern Statistics for Modern Biology
statistics
updated 14 days ago by
Ram
38k • written 4.2 years ago by
Jean-Karim Heriche
26k
32
votes
4
replies
6.4k
views
Tutorial:
Fast LD computation from VCF files using tomahawk
ld
snp
vcf
vcftools
bcftools
updated 12 days ago by
Ram
38k • written 4.4 years ago by
firestar
★ 1.5k
12
votes
4
replies
1.8k
views
Tutorial:
Tutorials for Library Normalization in DESeq2 and EdgeR
EdgeR
DESeq2
updated 6 days ago by
Ram
38k • written 5.5 years ago by
KVC_bioinfo
▴ 570
20
votes
4
replies
2.2k
views
Tutorial:
Bash One-liners collection on Github
bash
linux
shell
updated 14 days ago by
Ram
38k • written 3.9 years ago by
nim.1111.ou
▴ 180
9
votes
4
replies
9.0k
views
Tutorial:
Using the MinION MinKNOW software on Ubuntu 1604
long-reads
oxford-nanopore
minion
updated 14 days ago by
Ram
38k • written 3.7 years ago by
colindaven
4.6k
23
votes
4
replies
6.2k
views
Tutorial:
Using EnrichedHeatmap for visualization of NGS experiments
heatmap
chip-seq
atac-seq
EnrichedHeatmap
updated 14 days ago by
Ram
38k • written 3.6 years ago by
ATpoint
70k
15
votes
4
replies
4.1k
views
Tutorial:
RNASeq tutorial for gene differential expression analysis
Transcriptomics
bioconductor
RNA-Seq
R
updated 14 days ago by
Ram
38k • written 2.7 years ago by
Thind amarinder
▴ 300
6
votes
3
replies
4.1k
views
Tutorial:
Principles and Workflow of 16S/18S/ITS Amplicon Sequencing
alignment
sequencing
RNA-seq
gene
updated 14 days ago by
Ram
38k • written 4.4 years ago by
contact
▴ 40
5
votes
3
replies
4.5k
views
Tutorial:
bam2rpkm by bedtools
bam
RNA-Seq
bedtools
rpkm
updated 13 days ago by
toxin08x
• 0 • written 5.4 years ago by
jmzeng1314
▴ 130
4
votes
3
replies
3.9k
views
Tutorial:
How to get full taxonomy classification using taxize and myTAI
taxonomy
R
updated 14 days ago by
Ram
38k • written 5.0 years ago by
Daniel
★ 3.9k
50
votes
3
replies
4.0k
views
Tutorial:
[[ Please read before posting a question ::: How To Ask A Good Question ]]
how-to
updated 14 days ago by
Ram
38k • written 4.2 years ago by
ATpoint
70k
12
votes
2
replies
1.0k
views
Tutorial:
Factors in R - How do they work, and how did I break my data?
R
updated 14 days ago by
Ram
38k • written 2.0 years ago by
rpolicastro
11k
4
votes
2
replies
2.0k
views
Tutorial:
Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0
beagle
updated 15 days ago by
Ram
38k • written 3.8 years ago by
Shicheng Guo
★ 9.3k
2
votes
2
replies
1.5k
views
Tutorial:
Human mitochondrial DNA annotation in SnpEff
chrMT
SNP
snpEff
updated 14 days ago by
Ram
38k • written 2.8 years ago by
Arup Ghosh
3.1k
15
votes
2
replies
2.7k
views
Tutorial:
Introduction to bedtools.
bedtools
updated 19 days ago by
Ram
38k • written 8.4 years ago by
Aaronquinlan
11k
80
votes
2
replies
53k
views
Tutorial:
How To Ask Good Questions On Technical And Scientific Forums
how-to
updated 29 days ago by
Ram
38k • written 9.8 years ago by
Eric Normandeau
11k
6
votes
2
replies
2.4k
views
Tutorial:
Tutorial Bioinformatics Static Website
website
updated 26 days ago by
Ram
38k • written 9.2 years ago by
rob234king
▴ 610
5
votes
2
replies
2.0k
views
Tutorial:
NCBI submissions: SRA and TSA
NCBI
TSA
SRA
RNA-Seq
updated 12 days ago by
Ram
38k • written 4.4 years ago by
saraoppenheim
▴ 50
4
votes
2
replies
3.3k
views
Tutorial:
Introduce OpenGene: an open source library for processing NGS data
NGS
sequencing
Julia
OpenGene
updated 14 days ago by
Ram
38k • written 7.1 years ago by
chen
★ 2.4k
14
votes
2
replies
2.8k
views
Tutorial:
Methylation Analysis Tutorial in R_part2
cancer
methylation
RNA-Seq
R
updated 14 days ago by
Ram
38k • written 2.5 years ago by
Hamid Ghaedi
2.9k
5
votes
2
replies
2.0k
views
Tutorial:
Using Bedtools Closest (closestBed) to make distance histograms of protein binding frequency near all types of pre-RNA junctions (e.g. exon-intron an…
preRNA
closestBed
bedtools-closest
bedtools
updated 14 days ago by
Ram
38k • written 4.2 years ago by
linuxborg2
▴ 10
0
votes
1
reply
1.6k
views
Tutorial:
Guide Tutorial DEAP 2.1 In Windows 7
DEAP2.1
R
stata
updated 11 days ago by
Ram
38k • written 5.2 years ago by
helgasaraswati
▴ 10
2
votes
1
reply
2.5k
views
Tutorial:
How to extract and filter SNP data from the genotyping-by-sequencing (GBS) data in vcf format using bcftools
bcftools
SNP-Filtering
VCF
updated 14 days ago by
Ram
38k • written 3.1 years ago by
Asad Prodhan
▴ 10
2
votes
1
reply
1.2k
views
Tutorial:
A very simple way to detect viruses and microorganisms from mNGS FASTQ data using fastv
SARS-CoV-2
fastv
COVID-19
viruses
updated 14 days ago by
Ram
38k • written 2.8 years ago by
chen
★ 2.4k
12
votes
1
reply
4.8k
views
Tutorial:
scRNA-seq CITE-seq-count bioinformatics
CITE-seq-count
scRNA-seq
RNA-Seq
updated 14 days ago by
Ram
38k • written 3.0 years ago by
colindaven
4.6k
1
vote
1
reply
1.1k
views
Tutorial:
Downloading GnuWin and using to convert txt to bed file for windows users
bed
bed2txt
sequencing
txt
updated 14 days ago by
Ram
38k • written 2.6 years ago by
opheevallee
• 0
4
votes
1
reply
1.0k
views
Tutorial:
Real World BEDtools. Practical Examples for Variant Filtering and Gene Annotations
BED
BEDtools
updated 14 days ago by
Ram
38k • written 2.6 years ago by
sdsubaru33
▴ 40
11
votes
1
reply
2.2k
views
Tutorial:
Guidelines for the computational analysis of single-cell RNA sequencing data
scRNA-seq
updated 14 days ago by
Ram
38k • written 2.2 years ago by
Mensur Dlakic
★ 23k
5
votes
1
reply
2.3k
views
Tutorial:
Nice simple interactive Vim tutorial
vim
linux
updated 20 days ago by
Ram
38k • written 8.4 years ago by
Medhat
9.5k
8
votes
1
reply
1.0k
views
Tutorial:
Split a 'linearised' (flattened) FASTA sequence into multi-line using AWK
fasta
awk
updated 15 days ago by
Ram
38k • written 2.0 years ago by
Kevin Blighe
84k
6
votes
1
reply
2.8k
views
Tutorial:
Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data
ChIP-Seq
peak-calling
sequencing
updated 22 days ago by
Ram
38k • written 9.0 years ago by
dnaseiseq
▴ 220
0
votes
1
reply
2.4k
views
Tutorial:
Getting the lineage of an organism from NCBI taxonomy data
biosql
python
taxonomy
updated 14 days ago by
Ram
38k • written 4.6 years ago by
vimalkvn
▴ 310
10
votes
1
reply
2.0k
views
Tutorial:
introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
SARS-CoV-2
fastv
COVID-19
updated 14 days ago by
Ram
38k • written 3.0 years ago by
chen
★ 2.4k
5
votes
1
reply
1.7k
views
Tutorial:
A Guide to DNA Sequencing Techniques Part 1
dna
sanger
sequencing
pyrosequencing
updated 4 days ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
0
votes
0
replies
2.0k
views
Tutorial:
Using OpenEye software for substructure alignments and best-matching low-energy conformer overlays
rmsd
alignment
openeye
updated 22 days ago by
Ram
38k • written 8.7 years ago by
se.raschka
▴ 140
6
votes
0
replies
1.3k
views
Tutorial:
NCBI dbVar releases updated human reference structural variation (SV) data files and tutorials
dbvar
structural-variation
updated 12 days ago by
Ram
38k • written 4.4 years ago by
lonphan
▴ 70
0
votes
0
replies
855
views
Tutorial:
BrainArray CDF, annotation, etc
db
brainarray
cdf
updated 14 days ago by
Ram
38k • written 2.5 years ago by
Kevin Blighe
84k
4
votes
0
replies
1.4k
views
Tutorial:
NIH CDE browser for TCGA clinical data CDE codes
nih
tcga
metadata
cde
updated 14 days ago by
Ram
38k • written 3.0 years ago by
Kevin Blighe
84k
0
votes
0
replies
1.2k
views
Tutorial:
VIDEO: Installing BLAST Databases on Your Own Computer
BLAST-databases
Linux
sequence
MacOSX
updated 14 days ago by
Ram
38k • written 2.8 years ago by
brian.fristensky
▴ 440
7
votes
0
replies
4.5k
views
Tutorial:
How To Perform A Hierarchical Clustering Using Interactive Heatmaps From Gitools?
clustering
updated 25 days ago by
Ram
38k • written 9.0 years ago by
Michi
▴ 990
1
vote
0
replies
1.9k
views
Tutorial:
A short primer to pairwise alignment
pairwise-alignment
blastp
pam
blosum
updated 4 days ago by
Ram
38k • written 7.7 years ago by
Luke Crichton
▴ 370
26
votes
0
replies
2.1k
views
Tutorial:
Resources / databases for clinical interpretation of cancer variants
interpretation
cancer
annotation
variant
updated 14 days ago by
Ram
38k • written 3.5 years ago by
Malachi Griffith
19k
4
votes
0
replies
589
views
Tutorial:
Finding individual motif occurrences with FIMO from the MEME suite
motif
meme
jaspar
fimo
updated 12 days ago by
Ram
38k • written 4.3 years ago by
ATpoint
70k
6
votes
0
replies
3.4k
views
Tutorial:
How to predict genes using a two-pass (iterative) MAKER2 workflow
Assembly
updated 22 days ago by
Ram
38k • written 8.8 years ago by
Philipp Bayer
7.7k
1
vote
0
replies
126
views
Tutorial:
List of Machine Learning-Based Scoring Function Papers
machine_learning
papers
scoring_function
docking
13 days ago by
Milad
▴ 10
0
votes
0
replies
924
views
Tutorial:
Introduction to Gen3 Webinar
gen3
open-source
data-commons
big-data
updated 14 days ago by
Ram
38k • written 4.1 years ago by
Danielle
▴ 310
116 results • Page
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Recent Votes
Getting error in running GATK (GenomeAnalysisTK-3.7)?
Comment: Suggestion for approaching multiple conditions scRNA-seq
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Vertebrate Subset Nr Database? Build My Own?
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Answer: Question on how to filter DESeq2 results correctly and use of the results functi
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Comment: ClusterProfiler : What is GeneRatio and BgRatio?
by
Rene
• 0
genes <- letters[1:15] gs_df <- data.frame("gs_name"=c(rep("genesetX", 10), rep("genesetY", 25)), "entrez_g…
Comment: FeatureCounts >edgeR > GO
by
Pegasus
▴ 80
Thank you Basti. I annotated my genome using NCBI annotation tool, so I believe I should use the NCBI database. However, the gene_IDS l…
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
Eisuan
▴ 20
Hi, I analyzed the datasets separately as follows: - control+condition 1 - control + condition 1+2 (not all the three merged!) I applied…
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by
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38k
Right, that is one interpretation. Another is that they wish to replace the existing version and not add a new version, as most users new t…
Comment: Quality control of Chip-seq data (NRF and PCB)
by
Darked89
4.2k
If you remove the duplicates then the non-redundant/non-duplicated fraction will be 1.0. But if you save the log file during the de-duplic…
Comment: Update MitoZ 3.4 to 3.5
by
Darked89
4.2k
Well, the author asked for "update without uninstall", so I assumed he/she wants to keep the 3.4 version for the time being.
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
ATpoint
70k
"performed on Seurat" is like saying that the repair was done with a hammer and skrewdriver. Seurat has plenty of functions, you need to be…
Comment: Update MitoZ 3.4 to 3.5
by
Ram
38k
While this installs a conda environment with mitoz 3.5, it does not technically update the existing installation. Please note that this (i.…
Answer: Update MitoZ 3.4 to 3.5
by
Darked89
4.2k
conda create -n mitoz_35 conda activate mitoz_35 conda install -c bioconda mitoz **EDIT** you can also use Singularity conta…
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GenoMax
127k
You probably need to ask NCBI Help desk for an authoritative answer. Post their response when you get one here.
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animeshizik
• 0
Hello, thank you for responding to the problem! My work computer has 32GB of RAM. I was running an alignment for a 5000 genome monkey pox…
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
Eisuan
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Hi! Two biological replicates. The previous analysis has been performed on Seurat.
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Apex92
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Thank you.
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Hi shenwei356, Thanks for the clarification. That makes sense. I also realised that the reason I was confused, is because I need to also …
Comment: Suggestion for approaching multiple conditions scRNA-seq
by
rpolicastro
11k
Do you have 2 biological or technical replicates for each condition? Also, you mentioned you didn't find dramatic changes with your analysi…
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