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8 results • Page
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Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
13 minutes ago by
nhaus
▴ 330
5
votes
5
replies
590
views
Tutorial:
how to combine multiple RNAseq count files into a single dataframe in R and unix
Unix
RNAseq
R
updated 3 days ago by
Mbofire
• 0 • written 12 days ago by
Ming Tommy Tang
★ 3.9k
76
votes
72
replies
20k
views
19 follow
Tutorial:
Clustering of DAVID gene enrichment results from gene expression studies
enrichment
david
12 days ago by
Kevin Blighe
87k
5
votes
13
replies
1.6k
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
R
Ubuntu
Linux
Bioconductor
Rstudio
updated 16 days ago by
ATpoint
82k • written 17 days ago by
BioinfGuru
★ 1.7k
7
votes
3
replies
2.9k
views
Tutorial:
Prediction of Ribosomal RNA Genes Using RNAmmer Software
Annotation
rRNA
RNAmmer
Genome
updated 18 days ago by
colindaven
6.4k • written 16 months ago by
Dr.Animo
▴ 130
1
vote
0
replies
199
views
Tutorial:
DNA Methylation: Sequencing Techniques
WGBS
RRBS
19 days ago by
Novogene
▴ 420
87
votes
24
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
microarray
enrichment
RNA-Seq
GSEA
updated 19 days ago by
Gordon
• 0 • written 3.6 years ago by
Hamid Ghaedi
3.2k
99
votes
106
replies
47k
views
26 follow
Tutorial:
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes
PLINK
PCA
updated 28 days ago by
psb7
▴ 20 • written 5.7 years ago by
Kevin Blighe
87k
8 results • Page
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removeBatchEffect explained using base R linear models
removeBatchEffect explained using base R linear models
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We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
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Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴ 30
In your paper, you mentioned that a normalization value of 0 for Malat1 is also indicative of a low-quality cell. But what if the dropout e…
Comment: Highest variable features in single cell data
by
carolofharvest
▴ 30
Thank you. But can we say that this is biologically informative ? If this gene had been detected in excess specifically within a single c…
Answer: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
by
Weiwen
• 0
$20,000 for the first Prize?XD
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
by
Michael
54k
Why does your question sound like an assignment (if it's not, reformulate it, note you are in no position to give the volunteers here assig…
Answer: Converting Nebula Genomics Data to 23andMe Format
by
Michael
54k
Hi, Thank you for your contribution, here is your *free* code review: - This scenario is sort of ideal for a snakemake workflow and I th…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
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qwertyuiop26
• 0
I'm sorry for any confusion or inconvenience. I'm seeking guidance on which search algorithms are used in the FM-index. I've done extensive…
Comment: Bacterial plasmid analysis
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nicole.kavanagh
• 0
Hi Daria, I have downloaded pling and the other dependencies as recommended on your github page. I have tried to run the tool a few times …
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i.sudbery
19k
The insert size is measured from outermost edge of this read, to the outer most edge of its mate. Like, literally, start_second - start_fir…
Comment: Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, C
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54k
So this is your exam question or assignment? Please understand that posting this here is not doing anyone any good. You are supposed to lea…
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82k
I will say that the proper way is the one that confidently identifies your celltypes. > optimal number of marker genes to consider. T…
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swbarnes2
14k
When everything is the same size, correcting for size is pointless. It doesn't change the numbers much at all.
Comment: Understanding STAR output (Aligned.out.sam file)
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swbarnes2
14k
What do the alignments look like in IGV?
Comment: HCL database download
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sooni
▴ 20
I solved the problem! Thanks!
Comment: Gene Specific coverage from WGS data
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Adyasha
• 0
Thank you, here I am giving you some example , suppose I have bam files . 1.bam 2.bam 3.bam 4.bam now I want to see Spike gene coverage in …
Answer: Bioinformatics Analyst - Laboratory Medicine and Pathology
by
Xiaofen
• 0
I'm having a problem and I can't find the button to post, how do you post?
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