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Tutorial: Nonparametric Regression STATA 15
STATA-15 Nonparametric-Regression STATA
updated 15 days ago by 39k • written 5.4 years ago by ▴ 10
1
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0
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1.5k
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Tutorial: Using Subversion to update /devel branch of Bioconductor package
bioconductor subversion
updated 18 days ago by 39k • written 5.8 years ago by ▴ 350
0
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0
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1.4k
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Tutorial: PLS SEM (Partial Least Square Sructural Equation Modeling) Analysis WarpPLS 6
R
updated 15 days ago by 39k • written 5.3 years ago by ▴ 10
2
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0
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Tutorial: Webinar: Extracting research evidence from publications
text-mining ontology pubmed
updated 14 days ago by 39k • written 5.3 years ago by ▴ 60
0
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0
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1.3k
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Tutorial: MWD (Mackinnon, White And Davidson) In R
R
updated 15 days ago by 39k • written 5.3 years ago by ▴ 10
1
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0
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1.3k
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Tutorial: Fall 2017 Introduction to Human Genomics for Clinical Informaticists
genome
updated 15 days ago by 39k • written 5.4 years ago by ▴ 90
2
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0
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1.2k
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Tutorial: Principal Component Analysis (PCA ON T-BIOINFO)
RNA-Seq next-gen
updated 9 days ago by 39k • written 5.0 years ago by ▴ 340
0
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0
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1.2k
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Tutorial: Data Panel In R Commander
R
updated 15 days ago by 39k • written 5.5 years ago by ▴ 10
2
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0
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1.2k
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Tutorial: Free Book : Computational Biology of a cell signalling pathway using R
cell-signalling R Computational-Biology
updated 2 days ago by 39k • written 17 months ago by ▴ 20
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1.1k
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Tutorial: In the cloud - Guide to running VerifyBamID to estimate DNA sample contamination
sequence cloud dna sequencing
updated 9 days ago by 39k • written 4.8 years ago by • 0
3
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0
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310
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Tutorial: How to make a heatmap in R and deep understand it
heatmap r
29 days ago by Ming Tommy Tang ★ 2.9k
61 results • Page 2 of 2
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Comment: Low mapping percentage
Comment: Low mapping percentage
A: genomicranges outside sequence bounds
A: how can i download human ribosomal reference ?
Bayesian network for biological data using bnlearn
Comment: What does canonical transcript mean in the context of VEP
Answer: What does canonical transcript mean in the context of VEP
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Comment: Low mapping percentage by Sib ▴ 40
Thank you for the reply. If there is not much I can do about the contamination at this stage, what is the benefit of knowing the source of…
Answer: integrate single cell RNA sequencing data by Hamid Ghaedi 2.9k
There are different approaches that you may choose to deal with batch correction. Harmony is one of those approaches that has been shown to…
Comment: What does canonical transcript mean in the context of VEP by Vincent Laufer ★ 2.9k
@curious - The only thing I have to add to @yokofakun 's precise answer is that, while you are considering and reading about Ensembl canoni…
Comment: Help with running ATAC using Encode pipeline by Chris ▴ 100
Thank you for the instruction! I see the beside json file we also have input file which I am confused. Because we have already defined the …
Comment: Comparing loci across catalogs by rycro_c • 0
Hi @Austin, Did you ever figure this out?
Comment: Low mapping percentage by Dave Carlson ★ 1.3k
I've been faced with similar issues in the past. Both option 1 and 2 seem useful. You can also treat your data as accidental metagenomic …
Comment: How to sort gff3 according to chromosome order? by Pierre Lindenbaum 154k
-s, --stable stabilize sort by disabling last-resort comparison
Comment: Low mapping percentage by GenoMax 129k
If you do have contamination (either from rRNA of same species or from true contaminant(s)) there is not much you can do about that at this…
Comment: Optimum setting for local blastp for ~10K sequences by GenoMax 129k
> Running the same sequence on the blast web server took 10 seconds Don't try to compare anything local with NCBI's web blast infrastruct…
Comment: how to Construct a Newick tree file from five large fasta files by Joe 21k
Yes, I know - but that doesn't answer the question. **What *kind* of phylogenetic tree?**
Comment: Optimum setting for local blastp for ~10K sequences by sodiumnitrate ▴ 20
Thank you for the explanation! I managed to get diamond to work, but I'm having trouble getting it to run faster than blast. For a single t…
Comment: What is "pident" (percentage of identical matches) in the "Diamond" protein alig by GenoMax 129k
That is the question @Vincent answer poses since it seems to correspond to something different. You can also create an issue on https://gi…
Answer: How to sort gff3 according to chromosome order? by GenoMax 129k
Please use `AGAT`: https://agat.readthedocs.io/en/latest/topological-sorting-of-gff-features.html
Comment: convert data frame with character column to data frame with integer column by atemedorri137798 • 0
dear @Basti : As you said in order to clarify my issue I edit question box with give an example. I will be grateful if you take a look at …
Comment: How to sort gff3 according to chromosome order? by Ram 39k
Those are your options with the `sort` utility - you can either keep the existing order or re-order by coordinate. If you're looking for a …
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