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0
votes
1
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418
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Reference-guided transcriptome assembly using multiple SRA experiments ?
assembly Transcriptome projects SRA
updated 5 weeks ago by 15k • written 5 weeks ago by ▴ 270
0
votes
1
reply
2.0k
views
positive and negative Fold Change glmLRT test
RNA-Seq log2FC glmLRT differential-expression
updated 16 months ago by 45k • written 6.1 years ago by ▴ 270
29
votes
18
replies
27k
views
9 follow
Cleaning RNA-Seq data from rRNA
RNA-Seq rRNA cleaning QC
updated 3.1 years ago by ▴ 40 • written 9.2 years ago by ▴ 270
0
votes
2
replies
1.3k
views
Conserved regions in multiple fasta files (multiple species)?
fasta ClustalW Alignment
updated 2.3 years ago by 45k • written 3.5 years ago by ▴ 270
0
votes
2
replies
5.3k
views
How to calculate the AUC value for a ranger RF model ?
AUC value ranger randomForest classification
updated 3.8 years ago by • 0 • written 7.9 years ago by ▴ 270
3
votes
3
replies
1.3k
views
from fasta to gtf format?
gtf DE fasta
updated 17 months ago by ▴ 260 • written 4.2 years ago by ▴ 270
0
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0
replies
1.7k
views
Comment: C: different read names in paired-end data
4.3 years ago by debitboro ▴ 270
1
vote
3
replies
1.7k
views
different read names in paired-end data
fastq file read name header ABI-Solid
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 270
0
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1
reply
1.6k
views
Answer: A: prefetch and fast-dump problems?
4.3 years ago by debitboro ▴ 270
0
votes
3
replies
1.6k
views
prefetch and fast-dump problems?
prefetch SRA fastq-dump
updated 2.3 years ago by 45k • written 4.3 years ago by ▴ 270
0
votes
0
replies
793
views
tophat2 mapping fr-firststrand or fr-secondstrand ?
tophat2 fr-firststrand fr-secondstrand AB SOLiD
4.3 years ago by debitboro ▴ 270
0
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0
replies
1.0k
views
cuffmerge gtf_to_sam error?
assembly cufflinks cuffmerge gtf_to_sam
4.3 years ago by debitboro ▴ 270
0
votes
0
replies
2.5k
views
How to get the normalized counts matrix EDASeq ?
RNA-Seq normalization within lane normalization
updated 4.4 years ago by ▴ 220 • written 8.3 years ago by ▴ 270
1
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1
reply
3.1k
views
Answer: A: WGCNA - what is it for
4.6 years ago by debitboro ▴ 270
0
votes
0
replies
585
views
How can I adjust the Age of sample population?
age adjustment direct standardization
5.0 years ago by debitboro ▴ 270
2
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1
reply
3.6k
views
Answer: C: How to append two fastq files ?
5.6 years ago by debitboro ▴ 270
0
votes
1
reply
3.6k
views
Comment: C: How to append two fastq files ?
5.6 years ago by debitboro ▴ 270
0
votes
1
reply
3.6k
views
Comment: C: How to append two fastq files ?
5.6 years ago by debitboro ▴ 270
4
votes
8
replies
3.6k
views
How to append two fastq files ?
fastq RNA-Seq append merge
updated 2.8 years ago by ▴ 20 • written 5.6 years ago by ▴ 270
0
votes
1
reply
1.9k
views
sortMeRNA before or after adapters trimming ?
RNA-Seq rRNA sortMeRNA
updated 6.9 years ago by ★ 1.9k • written 7.2 years ago by ▴ 270
0
votes
1
reply
5.0k
views
Comment: C: short RNA reads alignment
7.1 years ago by debitboro ▴ 270
0
votes
1
reply
5.0k
views
Comment: C: short RNA reads alignment
7.1 years ago by debitboro ▴ 270
1
vote
9
replies
4.0k
views
All my reads fall in intergenic regions ?
RNA-Seq count per biotype intergenic regions
updated 7.2 years ago by 9.0k • written 7.2 years ago by ▴ 270
0
votes
0
replies
4.0k
views
Comment: C: All my reads fall in intergenic regions ?
7.2 years ago by debitboro ▴ 270
0
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2
replies
4.0k
views
Comment: C: All my reads fall in intergenic regions ?
updated 7.2 years ago by 45k • written 7.2 years ago by ▴ 270
0
votes
2
replies
4.0k
views
Comment: C: All my reads fall in intergenic regions ?
7.2 years ago by debitboro ▴ 270
0
votes
0
replies
4.3k
views
Answer: A: How to calculate distribution of mapped read over classes of RNA?
7.2 years ago by debitboro ▴ 270
1
vote
0
replies
2.3k
views
Answer: A: Precision Medicine Bioinformatics: From raw genome and transcriptome data to cli
7.2 years ago by debitboro ▴ 270
0
votes
1
reply
4.4k
views
Questions about STAR and Bowtie (not Bowtie2) mapping
RNA-Seq STAR Bowtie uniquely mapped reads
updated 7.2 years ago by 45k • written 7.2 years ago by ▴ 270
2
votes
12
replies
5.0k
views
short RNA reads alignment
RNA-Seq short reads alignment
7.2 years ago by debitboro ▴ 270
0
votes
0
replies
5.0k
views
Comment: A: short RNA reads alignment
7.2 years ago by debitboro ▴ 270
0
votes
1
reply
1.3k
views
Check variance stabilization transformation ?
RNA-Seq variance stabilization DESeq2
updated 7.3 years ago by 15k • written 7.3 years ago by ▴ 270
0
votes
2
replies
2.7k
views
WGNCA RNASeq without time series
time-series RNA-Seq WGCNA
updated 2.1 years ago by 45k • written 9.1 years ago by ▴ 270
0
votes
0
replies
1.6k
views
How can I get the OOB samples used for each tree in random forest model R?
randomForest OOB samples
7.5 years ago by debitboro ▴ 270
4
votes
3
replies
5.2k
views
Technical and Biological replicates
RNA-Seq technical replicates biological replicates
updated 7.5 years ago by ▴ 30 • written 9.1 years ago by ▴ 270
2
votes
1
reply
2.3k
views
ggplot expression values as function of samples and classes
ggplot miRNA expression classes
updated 7.9 years ago by 5.2k • written 7.9 years ago by ▴ 270
0
votes
8
replies
2.9k
views
Tophat2 mapping takes a lot of time
Tophat2 mapping Cluster
updated 8.0 years ago by 20 • written 9.1 years ago by ▴ 270
2
votes
1
reply
2.2k
views
Answer: A: Bug in RUV spike-in normalization?
8.0 years ago by debitboro ▴ 270
0
votes
0
replies
2.2k
views
ConsensusPathDB pathway enrichment analysis
Enrichemnt analysis ConsensusPathDB
8.1 years ago by debitboro ▴ 270
0
votes
1
reply
1.9k
views
How can I check for library composition bias RNA-seq data
library composition bias normalization RNA-seq
updated 8.1 years ago by ★ 2.1k • written 8.1 years ago by ▴ 270
0
votes
1
reply
27k
views
Comment: C: Cleaning RNA-Seq data from rRNA
8.1 years ago by debitboro ▴ 270
0
votes
1
reply
27k
views
Comment: C: Cleaning RNA-Seq data from rRNA
8.1 years ago by debitboro ▴ 270
0
votes
1
reply
4.3k
views
Comment: C: I get the same modules but different number of genes WGCNA
8.1 years ago by debitboro ▴ 270
0
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0
replies
4.3k
views
Comment: C: I get the same modules but different number of genes WGCNA
8.1 years ago by debitboro ▴ 270
2
votes
5
replies
4.3k
views
I get the same modules but different number of genes WGCNA
WGCNA Module genes geneModuleMembership
8.1 years ago by debitboro ▴ 270
0
votes
0
replies
2.0k
views
OOB error vs Cross Validation
random Forests Cross validation OOB error
8.2 years ago by debitboro ▴ 270
0
votes
1
reply
18k
views
Answer: A: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
8.2 years ago by debitboro ▴ 270
0
votes
0
replies
18k
views
Comment: C: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
8.2 years ago by debitboro ▴ 270
0
votes
1
reply
34k
views
Comment: C: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
8.2 years ago by debitboro ▴ 270
1
vote
2
replies
2.2k
views
positive control and negative control genes list
positive control genes DEGs
8.2 years ago by debitboro ▴ 270
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