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17
votes
18
replies
18k
views
9 follow
Cleaning RNA-Seq data from rRNA
RNA-Seq rRNA cleaning QC
updated 10 months ago by • 0 • written 7.0 years ago by ▴ 250
0
votes
2
replies
571
views
Conserved regions in multiple fasta files (multiple species)?
fasta ClustalW Alignment
updated 9 days ago by 38k • written 15 months ago by ▴ 250
0
votes
2
replies
3.9k
views
How to calculate the AUC value for a ranger RF model ?
AUC value ranger randomForest classification
updated 19 months ago by • 0 • written 5.6 years ago by ▴ 250
0
votes
2
replies
568
views
from fasta to gtf format?
gtf DE fasta
updated 23 months ago by 13k • written 23 months ago by ▴ 250
0
votes
0
replies
659
views
Comment: C: different read names in paired-end data
2.0 years ago by debitboro ▴ 250
1
vote
3
replies
659
views
different read names in paired-end data
fastq file read name header ABI-Solid
updated 2.0 years ago by 11k • written 2.0 years ago by ▴ 250
0
votes
3
replies
933
views
prefetch and fast-dump problems?
prefetch SRA fastq-dump
updated 7 days ago by 38k • written 2.1 years ago by ▴ 250
0
votes
1
reply
933
views
Answer: A: prefetch and fast-dump problems?
2.0 years ago by debitboro ▴ 250
0
votes
0
replies
423
views
tophat2 mapping fr-firststrand or fr-secondstrand ?
tophat2 fr-firststrand fr-secondstrand AB SOLiD
2.1 years ago by debitboro ▴ 250
0
votes
0
replies
532
views
cuffmerge gtf_to_sam error?
assembly cufflinks cuffmerge gtf_to_sam
2.1 years ago by debitboro ▴ 250
0
votes
0
replies
2.0k
views
How to get the normalized counts matrix EDASeq ?
RNA-Seq normalization within lane normalization
updated 2.2 years ago by ▴ 140 • written 6.1 years ago by ▴ 250
1
vote
1
reply
1.4k
views
Answer: A: WGCNA - what is it for
2.4 years ago by debitboro ▴ 250
0
votes
0
replies
329
views
How can I adjust the Age of sample population?
age adjustment direct standardization
2.8 years ago by debitboro ▴ 250
2
votes
1
reply
2.2k
views
Answer: C: How to append two fastq files ?
3.4 years ago by debitboro ▴ 250
0
votes
1
reply
2.2k
views
Comment: C: How to append two fastq files ?
3.4 years ago by debitboro ▴ 250
0
votes
1
reply
2.2k
views
Comment: C: How to append two fastq files ?
3.4 years ago by debitboro ▴ 250
4
votes
8
replies
2.2k
views
How to append two fastq files ?
fastq RNA-Seq append merge
updated 7 months ago by ▴ 20 • written 3.4 years ago by ▴ 250
0
votes
0
replies
1.2k
views
positive and negative Fold Change glmLRT test
RNA-Seq log2FC glmLRT differential expression
3.9 years ago by debitboro ▴ 250
0
votes
1
reply
1.4k
views
sortMeRNA before or after adapters trimming ?
RNA-Seq rRNA sortMeRNA
updated 4.7 years ago by ★ 1.6k • written 5.0 years ago by ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: short RNA reads alignment
4.9 years ago by debitboro ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: short RNA reads alignment
4.9 years ago by debitboro ▴ 250
1
vote
9
replies
2.6k
views
All my reads fall in intergenic regions ?
RNA-Seq count per biotype intergenic regions
updated 4.9 years ago by 8.6k • written 4.9 years ago by ▴ 250
0
votes
0
replies
2.6k
views
Comment: C: All my reads fall in intergenic regions ?
4.9 years ago by debitboro ▴ 250
0
votes
2
replies
2.6k
views
Comment: C: All my reads fall in intergenic regions ?
updated 4.9 years ago by 38k • written 4.9 years ago by ▴ 250
0
votes
2
replies
2.6k
views
Comment: C: All my reads fall in intergenic regions ?
4.9 years ago by debitboro ▴ 250
0
votes
0
replies
3.1k
views
Answer: A: How to calculate distribution of mapped read over classes of RNA?
4.9 years ago by debitboro ▴ 250
1
vote
0
replies
1.7k
views
Answer: A: Precision Medicine Bioinformatics: From raw genome and transcriptome data to cli
5.0 years ago by debitboro ▴ 250
0
votes
1
reply
3.7k
views
Questions about STAR and Bowtie (not Bowtie2) mapping
RNA-Seq STAR Bowtie uniquely mapped reads
updated 5.0 years ago by 38k • written 5.0 years ago by ▴ 250
2
votes
12
replies
3.1k
views
short RNA reads alignment
RNA-Seq short reads alignment
5.0 years ago by debitboro ▴ 250
0
votes
0
replies
3.1k
views
Comment: A: short RNA reads alignment
5.0 years ago by debitboro ▴ 250
0
votes
1
reply
821
views
Check variance stabilization transformation ?
RNA-Seq variance stabilization DESeq2
updated 5.0 years ago by 13k • written 5.0 years ago by ▴ 250
0
votes
2
replies
2.1k
views
WGNCA RNASeq without time series
RNA-Seq WGCNA time series
updated 5.0 years ago by 20 • written 6.9 years ago by ▴ 250
0
votes
0
replies
1.2k
views
How can I get the OOB samples used for each tree in random forest model R?
randomForest OOB samples
5.3 years ago by debitboro ▴ 250
4
votes
3
replies
4.1k
views
Technical and Biological replicates
RNA-Seq technical replicates biological replicates
updated 5.3 years ago by ▴ 30 • written 6.9 years ago by ▴ 250
2
votes
1
reply
1.8k
views
ggplot expression values as function of samples and classes
ggplot miRNA expression classes
updated 5.6 years ago by 5.2k • written 5.6 years ago by ▴ 250
0
votes
8
replies
2.1k
views
Tophat2 mapping takes a lot of time
Tophat2 mapping Cluster
updated 5.8 years ago by 20 • written 6.9 years ago by ▴ 250
2
votes
1
reply
1.6k
views
Answer: A: Bug in RUV spike-in normalization?
5.8 years ago by debitboro ▴ 250
0
votes
0
replies
1.7k
views
ConsensusPathDB pathway enrichment analysis
Enrichemnt analysis ConsensusPathDB
5.8 years ago by debitboro ▴ 250
0
votes
1
reply
1.4k
views
How can I check for library composition bias RNA-seq data
library composition bias normalization RNA-seq
updated 5.9 years ago by ★ 1.6k • written 5.9 years ago by ▴ 250
0
votes
1
reply
18k
views
Comment: C: Cleaning RNA-Seq data from rRNA
5.9 years ago by debitboro ▴ 250
0
votes
1
reply
18k
views
Comment: C: Cleaning RNA-Seq data from rRNA
5.9 years ago by debitboro ▴ 250
0
votes
1
reply
3.1k
views
Comment: C: I get the same modules but different number of genes WGCNA
5.9 years ago by debitboro ▴ 250
0
votes
0
replies
3.1k
views
Comment: C: I get the same modules but different number of genes WGCNA
5.9 years ago by debitboro ▴ 250
2
votes
5
replies
3.1k
views
I get the same modules but different number of genes WGCNA
WGCNA Module genes geneModuleMembership
5.9 years ago by debitboro ▴ 250
0
votes
0
replies
1.6k
views
OOB error vs Cross Validation
random Forests Cross validation OOB error
6.0 years ago by debitboro ▴ 250
0
votes
1
reply
15k
views
Answer: A: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
6.0 years ago by debitboro ▴ 250
0
votes
0
replies
15k
views
Comment: C: Machine Learning For Cancer Classification - Part 3 - Predicting With A Random F
6.0 years ago by debitboro ▴ 250
0
votes
1
reply
30k
views
Comment: C: Machine Learning For Cancer Classification - Part 1 - Preparing The Data Sets
6.0 years ago by debitboro ▴ 250
1
vote
2
replies
1.7k
views
positive control and negative control genes list
positive control genes DEGs
6.0 years ago by debitboro ▴ 250
1
vote
1
reply
5.7k
views
How can I get the normalized counts matrix after doing TMM normalization using edgeR
TMM CPM normalization
updated 6.0 years ago by ▴ 70 • written 6.2 years ago by ▴ 250
90 results • Page 1 of 2
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