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Reference of Whole exome sequecing analysis
WES NGS variant calling mutation BWA
updated 5.6 years ago by 5.9k • written 5.6 years ago by ▴ 30
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1
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12k
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Answer: A: Cutadapt On Windows
updated 6.0 years ago by 45k • written 10.0 years ago by ▴ 30
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0
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1.4k
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How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
RNA-Seq assembly Trinity Transdecoder
updated 6.0 years ago by 20 • written 6.2 years ago by ▴ 30
4
votes
2
replies
3.0k
views
NCBI gene Dabase info extration
NCBI Gene Databe gene ontology
updated 6.0 years ago by ★ 3.9k • written 6.0 years ago by ▴ 30
1
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4
replies
1.5k
views
PCA for multiple transcriptome-assemblies
assembly rna-seq next-gen R
6.1 years ago by Shahzad ▴ 30
0
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0
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2.2k
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Comment: C: drmtools installation error
6.1 years ago by Shahzad ▴ 30
0
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1
reply
3.9k
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Comment: C: Extracting fasta sequences with identical header
6.2 years ago by Shahzad ▴ 30
0
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3
replies
1.9k
views
abundance_estimates_to_matrix.pl error while processing kallisto output
RNA-Seq denovo Assembly abundance_estimates
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 30
0
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1
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2.2k
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Comment: C: drmtools installation error
6.2 years ago by Shahzad ▴ 30
0
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1
reply
2.2k
views
Comment: C: drmtools installation error
6.2 years ago by Shahzad ▴ 30
0
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1
reply
2.2k
views
Comment: C: drmtools installation error
6.2 years ago by Shahzad ▴ 30
0
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1
reply
2.2k
views
Comment: C: drmtools installation error
6.2 years ago by Shahzad ▴ 30
4
votes
10
replies
2.2k
views
drmtools installation error
drmtools cmake make
updated 6.2 years ago by 154k • written 6.2 years ago by ▴ 30
0
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0
replies
1.3k
views
which file from the Transdecoder.predict to be used for cd-hit input?
sequencing RNA-Seq Assembly Transdecoder cd-hit
6.2 years ago by Shahzad ▴ 30
0
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1
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5.4k
views
Comment: C: Filtering fasta file based on identifier
6.2 years ago by Shahzad ▴ 30
0
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0
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3.7k
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Comment: Comment: Is there any tool to convert blastx format from tabular to xml for feeding it to
updated 3.0 years ago by 45k • written 6.3 years ago by ▴ 30
0
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1
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1.9k
views
Comment: A: abundance_estimates_to_matrix.pl error while processing kallisto output
6.3 years ago by Shahzad ▴ 30
0
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0
replies
7.3k
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Comment: C: how to extract the longest isoform from trinity outfils
6.3 years ago by Shahzad ▴ 30
0
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1
reply
7.3k
views
Comment: A: how to extract the longest isoform from trinity outfils
updated 6.3 years ago by 154k • written 6.3 years ago by ▴ 30
0
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1
reply
4.5k
views
Comment: C: how to extract counts from bam/merge-bam without gtf
7.0 years ago by Shahzad ▴ 30
3
votes
5
replies
4.5k
views
how to extract counts from bam/merge-bam without gtf
RNA-Seq R bowtie2 samtools Hisat2
updated 7.0 years ago by ★ 4.0k • written 7.0 years ago by ▴ 30
0
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0
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4.5k
views
Comment: C: how to extract counts from bam/merge-bam without gtf
7.0 years ago by Shahzad ▴ 30
0
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0
replies
7.4k
views
Comment: C: hisat2 and RSEM pipeline
7.0 years ago by Shahzad ▴ 30
1
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3
replies
7.4k
views
hisat2 and RSEM pipeline
rna-seq software error hisat2 gtf RSEM
updated 7.0 years ago by 7.6k • written 7.0 years ago by ▴ 30
0
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0
replies
7.1k
views
Comment: C: Can I use own transcriptome without GTF file?
7.0 years ago by Shahzad ▴ 30
0
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1
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18k
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Comment: C: Sort bam file by coordinates using samtools
7.1 years ago by Shahzad ▴ 30
0
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1
reply
18k
views
Comment: C: Sort bam file by coordinates using samtools
updated 7.1 years ago by 48k • written 7.1 years ago by ▴ 30
0
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1
reply
18k
views
Comment: C: Sort bam file by coordinates using samtools
updated 7.1 years ago by 5.3k • written 7.1 years ago by ▴ 30
9
votes
13
replies
18k
views
Sort bam file by coordinates using samtools
next-gen-sequencing gene rna-seq
updated 2.4 years ago by 45k • written 7.1 years ago by ▴ 30
0
votes
3
replies
18k
views
Comment: C: Sort bam file by coordinates using samtools
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 30
3
votes
3
replies
5.1k
views
miRNA target prediction tools
miRNA-target-prediction Virus virus-genome miRNA
updated 3.5 years ago by 45k • written 10.7 years ago by ▴ 30
1
vote
4
replies
4.6k
views
How to split SRA/fastq files
RNA-Seq next-gen fastq
updated 8.1 years ago by ▴ 310 • written 9.4 years ago by ▴ 30
8
votes
12
replies
16k
views
7 follow
FastQC not making html output report.
RNA-Seq FastQC QC Adapter Trim NGS
updated 8.2 years ago by 8.9k • written 9.5 years ago by ▴ 30
0
votes
0
replies
4.7k
views
Trinity Error, not recognizing read name formatting: [1]
RNA-Seq De Novo Transcriptome Trinity Assembly
8.2 years ago by Shahzad ▴ 30
0
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0
replies
23k
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Comment: C: Multiple Alignment: Protein Or Nucleotide Sequence?
8.7 years ago by Shahzad ▴ 30
0
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0
replies
16k
views
Comment: C: FastQC not making html output report.
8.9 years ago by Shahzad ▴ 30
1
vote
3
replies
2.9k
views
How to identify the different varieties of same species in Plants?
genome sequencing sequence next-gen
updated 8.9 years ago by ★ 3.7k • written 8.9 years ago by ▴ 30
0
votes
1
reply
10k
views
Answer: A: How to add tophat and bowtie to the path?
8.9 years ago by Shahzad ▴ 30
0
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0
replies
2.9k
views
Comment: C: How to identify the different varieties of same species in Plants?
8.9 years ago by Shahzad ▴ 30
0
votes
2
replies
207k
views
Comment: C: How To Deal With Duplicate Row Names Error In R
9.1 years ago by Shahzad ▴ 30
0
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1
reply
2.8k
views
Comment: C: How to identify the miRNA counts column?
9.1 years ago by Shahzad ▴ 30
1
vote
3
replies
2.8k
views
How to identify the miRNA counts column?
counts miRNA NGS biostat bedtools
9.1 years ago by Shahzad ▴ 30
0
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1
reply
2.3k
views
Comment: C: SortMeRNA starts, pauses, never finishes
9.1 years ago by Shahzad ▴ 30
0
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0
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2.5k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
9.2 years ago by Shahzad ▴ 30
0
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0
replies
2.5k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
9.2 years ago by Shahzad ▴ 30
5
votes
6
replies
2.5k
views
How to sequence a gene along with its 3' and 5' UTR
gene sequence UTRs
updated 9.2 years ago by 9.0k • written 9.2 years ago by ▴ 30
0
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1
reply
2.5k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
9.2 years ago by Shahzad ▴ 30
0
votes
0
replies
4.6k
views
Comment: C: How to split SRA/fastq files
9.4 years ago by Shahzad ▴ 30
0
votes
0
replies
16k
views
Answer: A: How to get counts of STAR output (sam/bam).
9.4 years ago by Shahzad ▴ 30
9
votes
7
replies
16k
views
How to get counts of STAR output (sam/bam).
RNA-Seq rna-seq alignment Assembly genome
9.4 years ago by Shahzad ▴ 30
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