Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
777
views
Reference of Whole exome sequecing analysis
WES NGS variant calling mutation BWA
updated 3.2 years ago by 5.7k • written 3.2 years ago by ▴ 30
0
votes
1
reply
9.5k
views
Answer: A: Cutadapt On Windows
updated 3.5 years ago by 39k • written 7.5 years ago by ▴ 30
0
votes
0
replies
938
views
How to retain Trinity Transcriptome assembly headers after running Transdecoder on the assembly?
RNA-Seq assembly Trinity Transdecoder
updated 3.6 years ago by 20 • written 3.8 years ago by ▴ 30
4
votes
2
replies
990
views
NCBI gene Dabase info extration
NCBI Gene Databe gene ontology
updated 3.6 years ago by ★ 3.5k • written 3.6 years ago by ▴ 30
1
vote
4
replies
762
views
PCA for multiple transcriptome-assemblies
assembly rna-seq next-gen R
3.7 years ago by Shahzad ▴ 30
0
votes
0
replies
1.1k
views
Comment: C: drmtools installation error
3.7 years ago by Shahzad ▴ 30
0
votes
1
reply
2.7k
views
Comment: C: Extracting fasta sequences with identical header
3.7 years ago by Shahzad ▴ 30
0
votes
3
replies
1.2k
views
abundance_estimates_to_matrix.pl error while processing kallisto output
RNA-Seq denovo Assembly abundance_estimates
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: drmtools installation error
3.8 years ago by Shahzad ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: drmtools installation error
3.8 years ago by Shahzad ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: drmtools installation error
3.8 years ago by Shahzad ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: drmtools installation error
3.8 years ago by Shahzad ▴ 30
4
votes
10
replies
1.1k
views
drmtools installation error
drmtools cmake make
updated 3.8 years ago by 129k • written 3.8 years ago by ▴ 30
0
votes
0
replies
860
views
which file from the Transdecoder.predict to be used for cd-hit input?
sequencing RNA-Seq Assembly Transdecoder cd-hit
3.8 years ago by Shahzad ▴ 30
0
votes
1
reply
3.5k
views
Comment: C: Filtering fasta file based on identifier
3.8 years ago by Shahzad ▴ 30
0
votes
0
replies
2.8k
views
Comment: Comment: Is there any tool to convert blastx format from tabular to xml for feeding it to
updated 6 months ago by 39k • written 3.8 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Comment: A: abundance_estimates_to_matrix.pl error while processing kallisto output
3.8 years ago by Shahzad ▴ 30
0
votes
0
replies
5.3k
views
Comment: C: how to extract the longest isoform from trinity outfils
3.9 years ago by Shahzad ▴ 30
0
votes
1
reply
5.3k
views
Comment: A: how to extract the longest isoform from trinity outfils
updated 3.9 years ago by 129k • written 3.9 years ago by ▴ 30
0
votes
1
reply
2.9k
views
Comment: C: how to extract counts from bam/merge-bam without gtf
4.6 years ago by Shahzad ▴ 30
3
votes
5
replies
2.9k
views
how to extract counts from bam/merge-bam without gtf
RNA-Seq R bowtie2 samtools Hisat2
updated 4.6 years ago by ★ 3.8k • written 4.6 years ago by ▴ 30
0
votes
0
replies
2.9k
views
Comment: C: how to extract counts from bam/merge-bam without gtf
4.6 years ago by Shahzad ▴ 30
0
votes
0
replies
5.2k
views
Comment: C: hisat2 and RSEM pipeline
4.6 years ago by Shahzad ▴ 30
1
vote
3
replies
5.2k
views
hisat2 and RSEM pipeline
rna-seq software error hisat2 gtf RSEM
updated 4.6 years ago by 7.5k • written 4.6 years ago by ▴ 30
0
votes
0
replies
5.0k
views
Comment: C: Can I use own transcriptome without GTF file?
4.6 years ago by Shahzad ▴ 30
0
votes
1
reply
12k
views
Comment: C: Sort bam file by coordinates using samtools
4.7 years ago by Shahzad ▴ 30
0
votes
1
reply
12k
views
Comment: C: Sort bam file by coordinates using samtools
updated 4.7 years ago by 47k • written 4.7 years ago by ▴ 30
0
votes
1
reply
12k
views
Comment: C: Sort bam file by coordinates using samtools
updated 4.7 years ago by 5.2k • written 4.7 years ago by ▴ 30
9
votes
13
replies
12k
views
Sort bam file by coordinates using samtools
sequencing next-gen gene rna-seq Tool
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 30
0
votes
3
replies
12k
views
Comment: C: Sort bam file by coordinates using samtools
updated 4.7 years ago by 16k • written 4.7 years ago by ▴ 30
3
votes
3
replies
4.0k
views
miRNA target prediction tools
miRNA-target-prediction Virus virus-genome miRNA
updated 12 months ago by 39k • written 8.2 years ago by ▴ 30
1
vote
4
replies
3.8k
views
How to split SRA/fastq files
RNA-Seq next-gen fastq
updated 5.6 years ago by ▴ 310 • written 7.0 years ago by ▴ 30
8
votes
12
replies
14k
views
7 follow
FastQC not making html output report.
RNA-Seq FastQC QC Adapter Trim NGS
updated 5.7 years ago by 7.7k • written 7.1 years ago by ▴ 30
0
votes
0
replies
3.8k
views
Trinity Error, not recognizing read name formatting: [1]
RNA-Seq De Novo Transcriptome Trinity Assembly
5.7 years ago by Shahzad ▴ 30
0
votes
0
replies
19k
views
Comment: C: Multiple Alignment: Protein Or Nucleotide Sequence?
6.3 years ago by Shahzad ▴ 30
0
votes
0
replies
14k
views
Comment: C: FastQC not making html output report.
6.4 years ago by Shahzad ▴ 30
1
vote
3
replies
2.0k
views
How to identify the different varieties of same species in Plants?
genome sequencing sequence next-gen
updated 6.5 years ago by ★ 3.6k • written 6.5 years ago by ▴ 30
0
votes
1
reply
5.6k
views
Answer: A: How to add tophat and bowtie to the path?
6.5 years ago by Shahzad ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: How to identify the different varieties of same species in Plants?
6.5 years ago by Shahzad ▴ 30
0
votes
2
replies
185k
views
Comment: C: How To Deal With Duplicate Row Names Error In R
6.7 years ago by Shahzad ▴ 30
0
votes
1
reply
2.1k
views
Comment: C: How to identify the miRNA counts column?
6.7 years ago by Shahzad ▴ 30
1
vote
3
replies
2.1k
views
How to identify the miRNA counts column?
counts miRNA NGS biostat bedtools
6.7 years ago by Shahzad ▴ 30
0
votes
1
reply
1.6k
views
Comment: C: SortMeRNA starts, pauses, never finishes
6.7 years ago by Shahzad ▴ 30
0
votes
0
replies
1.4k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
6.7 years ago by Shahzad ▴ 30
0
votes
0
replies
1.4k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
6.7 years ago by Shahzad ▴ 30
5
votes
6
replies
1.4k
views
How to sequence a gene along with its 3' and 5' UTR
gene sequence UTRs
updated 6.7 years ago by 8.4k • written 6.7 years ago by ▴ 30
0
votes
1
reply
1.4k
views
Comment: C: How to sequence a gene along with its 3' and 5' UTR
6.7 years ago by Shahzad ▴ 30
0
votes
0
replies
3.8k
views
Comment: C: How to split SRA/fastq files
7.0 years ago by Shahzad ▴ 30
0
votes
0
replies
13k
views
Answer: A: How to get counts of STAR output (sam/bam).
7.0 years ago by Shahzad ▴ 30
9
votes
7
replies
13k
views
How to get counts of STAR output (sam/bam).
RNA-Seq rna-seq alignment Assembly genome
7.0 years ago by Shahzad ▴ 30
64 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6