Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
6
replies
3.7k
views
Remove both pair end reads with low mapping quality using Samtools
mapping-quality samtools
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 630
0
votes
2
replies
4.4k
views
Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 630
0
votes
0
replies
6.3k
views
Comment: C: Identify point mutations from each read in sam files
updated 4.4 years ago by 43k • written 8.6 years ago by ▴ 630
1
vote
0
replies
1.4k
views
Get Pseudotime Matrix in Monocole2?
monocole2
4.5 years ago by DVA ▴ 630
2
votes
2
replies
977
views
Check Conservation of a Given Protein Domain
blast
updated 5.1 years ago by ★ 1.0k • written 5.1 years ago by ▴ 630
0
votes
0
replies
1.3k
views
Comment: C: What happens when SNV caller looks at a SV (e.g. deletion) region?
5.2 years ago by DVA ▴ 630
4
votes
3
replies
1.3k
views
What happens when SNV caller looks at a SV (e.g. deletion) region?
snv deletion
updated 5.2 years ago by 47k • written 5.2 years ago by ▴ 630
0
votes
1
reply
1.0k
views
RNA Expression Pathway Database
database
updated 5.2 years ago by 20 • written 5.4 years ago by ▴ 630
0
votes
2
replies
1.3k
views
Differential Binding in Partek
ChIP-Seq ATAC-seq Partek
updated 5.2 years ago by ▴ 30 • written 5.2 years ago by ▴ 630
0
votes
0
replies
1.0k
views
Comment: C: How to handle RNASeq reads that can map to both human and mouse ref (e.g. conser
5.4 years ago by DVA ▴ 630
1
vote
2
replies
1.0k
views
How to handle RNASeq reads that can map to both human and mouse ref (e.g. conserved gene regions)?
alignment hisat2
updated 5.4 years ago by 13k • written 5.4 years ago by ▴ 630
0
votes
0
replies
1.9k
views
Comment: C: CIGAR and sequence length are inconsistent after HISAT alignment
5.5 years ago by DVA ▴ 630
0
votes
2
replies
1.9k
views
CIGAR and sequence length are inconsistent after HISAT alignment
hisat alignment rnaseq
updated 5.5 years ago by 104k • written 5.5 years ago by ▴ 630
1
vote
0
replies
1.2k
views
Comment: C: Count 0, 5, 20 covered sites in bam
5.6 years ago by DVA ▴ 630
0
votes
0
replies
1.2k
views
Comment: C: Count 0, 5, 20 covered sites in bam
5.6 years ago by DVA ▴ 630
4
votes
6
replies
1.2k
views
Count 0, 5, 20 covered sites in bam
wgs bam
updated 5.6 years ago by 161k • written 5.6 years ago by ▴ 630
0
votes
0
replies
1.2k
views
Comment: C: Count 0, 5, 20 covered sites in bam
5.6 years ago by DVA ▴ 630
1
vote
2
replies
1.0k
views
Extract the overlap of well-covered regions across multiple samples
coverage WGS
5.8 years ago by DVA ▴ 630
0
votes
0
replies
1.7k
views
Comment: C: Pathway enrichment with differential expression p-values
5.9 years ago by DVA ▴ 630
3
votes
2
replies
1.7k
views
Pathway enrichment with differential expression p-values
gene enrichment
updated 5.9 years ago by 8.3k • written 5.9 years ago by ▴ 630
1
vote
1
reply
1.3k
views
GSEA Phenotype Table Input
gsea
updated 5.9 years ago by ▴ 170 • written 5.9 years ago by ▴ 630
0
votes
0
replies
1.8k
views
Multiple factors & batch effects - DESeq2
deseq2
5.9 years ago by DVA ▴ 630
0
votes
1
reply
3.5k
views
Comment: C: Horizontal lines in MA plot (DESeq2)
5.9 years ago by DVA ▴ 630
2
votes
3
replies
3.5k
views
Horizontal lines in MA plot (DESeq2)
deseq2
5.9 years ago by DVA ▴ 630
0
votes
0
replies
4.5k
views
Comment: C: Which annotation file to use
6.0 years ago by DVA ▴ 630
0
votes
0
replies
4.5k
views
Comment: C: Which annotation file to use
6.0 years ago by DVA ▴ 630
0
votes
0
replies
6.3k
views
Comment: C: High Unassigned Ambiguity in Feature Counts
6.0 years ago by DVA ▴ 630
0
votes
2
replies
4.5k
views
Comment: C: Which annotation file to use
6.0 years ago by DVA ▴ 630
0
votes
1
reply
4.5k
views
Comment: C: Which annotation file to use
6.0 years ago by DVA ▴ 630
4
votes
10
replies
4.5k
views
Which annotation file to use
RNA-Seq
updated 6.0 years ago by 35k • written 6.0 years ago by ▴ 630
0
votes
0
replies
4.5k
views
Comment: C: Which annotation file to use
6.0 years ago by DVA ▴ 630
0
votes
1
reply
6.3k
views
Comment: C: High Unassigned Ambiguity in Feature Counts
6.0 years ago by DVA ▴ 630
4
votes
4
replies
6.3k
views
High Unassigned Ambiguity in Feature Counts
feature count
updated 6.0 years ago by ★ 3.8k • written 6.0 years ago by ▴ 630
0
votes
1
reply
2.0k
views
Comment: C: Mask gtf file for cufflinks
6.0 years ago by DVA ▴ 630
1
vote
0
replies
2.0k
views
Comment: C: Mask gtf file for cufflinks
6.0 years ago by DVA ▴ 630
0
votes
1
reply
2.0k
views
Comment: C: Mask gtf file for cufflinks
6.0 years ago by DVA ▴ 630
3
votes
6
replies
2.0k
views
Mask gtf file for cufflinks
RNA-Seq
6.0 years ago by DVA ▴ 630
2
votes
0
replies
2.4k
views
Comment: C: HISAT2 tmo and rna-strandness options not working as expected
6.1 years ago by DVA ▴ 630
8
votes
2
replies
2.4k
views
HISAT2 tmo and rna-strandness options not working as expected
RNA-Seq
6.1 years ago by DVA ▴ 630
0
votes
1
reply
2.2k
views
Comment: C: Reasons for polyA in RNA Seq Reads
6.1 years ago by DVA ▴ 630
0
votes
3
replies
2.2k
views
Reasons for polyA in RNA Seq Reads
RNA-Seq
6.1 years ago by DVA ▴ 630
0
votes
0
replies
2.2k
views
Comment: C: Base pair order in sequencer vs in fastq
6.1 years ago by DVA ▴ 630
0
votes
1
reply
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
4
votes
2
replies
2.2k
views
Base pair order in sequencer vs in fastq
sequencing
updated 6.1 years ago by 16k • written 6.1 years ago by ▴ 630
0
votes
1
reply
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
0
votes
1
reply
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
0
votes
0
replies
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
0
votes
1
reply
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
0
votes
0
replies
5.3k
views
Comment: C: Best way to trim PolyA in RNA Seq reads?
6.1 years ago by DVA ▴ 630
10
votes
13
replies
5.3k
views
Best way to trim PolyA in RNA Seq reads?
RNA-Seq
updated 6.1 years ago by 47k • written 6.1 years ago by ▴ 630
152 results • Page 1 of 4
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6