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241
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#Bismark Methylation mapping Error
Bismark0.24
Multicore
Methylation
updated 11 weeks ago by
GenoMax
142k • written 11 weeks ago by
Nai
▴ 50
0
votes
0
replies
332
views
Density plot for Quantile and Quartile normalization in geomx workflow
GeoMX
workflow
8 months ago by
Nai
▴ 50
0
votes
2
replies
789
views
GEOMX SPATIAL TRANSCRIPTOMICs
NGS
transcriptomics
ncounter
GEOMX
12 months ago by
Nai
▴ 50
0
votes
0
replies
302
views
Haploview Error
plink
Haploview
vep
12 months ago by
Nai
▴ 50
0
votes
0
replies
328
views
Haploview linkage format .ped and .info file error
plink
Haploview
vcftools
updated 10 months ago by
Ram
43k • written 13 months ago by
Nai
▴ 50
0
votes
0
replies
288
views
File has zero value indivuals
Haploview
updated 13 months ago by
Ram
43k • written 13 months ago by
Nai
▴ 50
0
votes
2
replies
657
views
logFC is negative, need help to get it done
Limma
R
updated 14 months ago by
i.sudbery
19k • written 14 months ago by
Nai
▴ 50
0
votes
3
replies
752
views
Third quartile normalized logFC data to find differentially express gene using limma
Limma
R
updated 14 months ago by
Basti
★ 2.0k • written 14 months ago by
Nai
▴ 50
0
votes
2
replies
607
views
Design matrix in limma
Limma
R
14 months ago by
Nai
▴ 50
0
votes
6
replies
896
views
Differentially gene expression analysis
Limma
Deseq
R
updated 15 months ago by
Victor J. Fernández
▴ 40 • written 15 months ago by
Nai
▴ 50
0
votes
0
replies
910
views
Add column in Obs. in anndata using scanpy
scanpy
15 months ago by
Nai
▴ 50
9
votes
4
replies
1.1k
views
Easiest way to design Bioinformatics pipeline
snakeflow
python
Nextflow
updated 16 months ago by
ATpoint
82k • written 16 months ago by
Nai
▴ 50
0
votes
4
replies
659
views
Association of allele in population
Plink
17 months ago by
Nai
▴ 50
2
votes
4
replies
1.2k
views
VEP annotated vcf is not readable in bcftools
bcftools
Plink
updated 10 months ago by
Ram
43k • written 17 months ago by
Nai
▴ 50
1
vote
9
replies
2.2k
views
VEP annotated VCF conversion into TSV/Text
R
bcftools
VEP
VCF
updated 17 months ago by
yussab
▴ 90 • written 17 months ago by
Nai
▴ 50
1
vote
2
replies
778
views
VEP generated VCF file filtering using gnamAD, CADD , dbNSF etc with out loosing sample specific variants.
bcftools
vep
R
VCF
updated 13 months ago by
Ram
43k • written 17 months ago by
Nai
▴ 50
2
votes
6
replies
2.1k
views
GeoMX NGS RNASeq data analysis
NGS
RNA-Seq
GeoMX
updated 18 months ago by
Ram
43k • written 18 months ago by
Nai
▴ 50
0
votes
3
replies
1.0k
views
Hardy-Weinberg equilibrium analysis in Plink for association study.
Plink
association
study
updated 22 months ago by
Pedro
• 0 • written 22 months ago by
Nai
▴ 50
0
votes
1
reply
483
views
SPSS : Descriptive analysis cross tabs error
crosstabs
SPSS
descriptive
analysis
updated 22 months ago by
Mensur Dlakic
★ 27k • written 22 months ago by
Nai
▴ 50
0
votes
0
replies
322
views
SPSS statistics Analysis
quantitative
SPSS
variable
Marker
analysis
Genotype
Clinical
22 months ago by
Nai
▴ 50
2
votes
4
replies
815
views
PLINK CASE-CONTROL ANALYSIS
PLINK
22 months ago by
Nai
▴ 50
4
votes
5
replies
3.1k
views
Pandas issue: To write multiple csv in loop
Pandas
Python
R
23 months ago by
Nai
▴ 50
0
votes
0
replies
321
views
Expression and splicing QTL
eqtl
MATRIXEQTL
updated 13 months ago by
Ram
43k • written 2.1 years ago by
Nai
▴ 50
0
votes
0
replies
355
views
miRNA prediction using mRNA bam files
miRNA
BAM
updated 13 months ago by
Ram
43k • written 2.2 years ago by
Nai
▴ 50
0
votes
0
replies
414
views
EQTL visualization
list
EQTL
plot
2.2 years ago by
Nai
▴ 50
0
votes
0
replies
365
views
criteria for pvOutputThreshold = 1e-100 in EQTLMATRIX and creation of geneloc.txt for ciseQTL
eQTL
updated 10 months ago by
Ram
43k • written 2.2 years ago by
Nai
▴ 50
1
vote
4
replies
1.1k
views
Bacterial genoem annotation online tools
Bacterial
genome
2.2 years ago by
Nai
▴ 50
0
votes
1
reply
551
views
Assign RSID to ID . / blank column in vcf file
ID
VCF
updated 13 months ago by
Ram
43k • written 2.2 years ago by
Nai
▴ 50
0
votes
0
replies
365
views
MATRIXEQTL: Error during load SNPMATRIX.txt in MATRIXEQTL
data
MATRIXEQTL
dims
SNPMATRIX.txt
updated 2.3 years ago by
GenoMax
142k • written 2.3 years ago by
Nai
▴ 50
1
vote
4
replies
975
views
Help needed
bioalcidae
updated 13 months ago by
Ram
43k • written 2.3 years ago by
Nai
▴ 50
0
votes
7
replies
1.3k
views
SNPid or chromosomal number and position in vcf
VCF
SNP
2.3 years ago by
Nai
▴ 50
0
votes
13
replies
2.4k
views
eQTL Analysis
and
expression
genotypic
gene
data
SNP
2.3 years ago by
Nai
▴ 50
0
votes
0
replies
382
views
EQTL MATRIX _EQTL
GE
SNP
EQTL
updated 13 months ago by
Ram
43k • written 2.3 years ago by
Nai
▴ 50
2
votes
4
replies
911
views
Learning how to create a pipeline in python
snakemake
Python
updated 2.5 years ago by
Wayne
★ 2.0k • written 2.5 years ago by
Nai
▴ 50
0
votes
2
replies
773
views
Heatmap for large significant data
pvalue
data
Heatmap
large
2.5 years ago by
Nai
▴ 50
0
votes
2
replies
669
views
vcf file indiviual column interpretation
vcf
rsid
updated 13 months ago by
Ram
43k • written 2.5 years ago by
Nai
▴ 50
0
votes
0
replies
427
views
Fetch rsid and related genotype/sample from vcf file
vcf
rsid
updated 13 months ago by
Ram
43k • written 2.5 years ago by
Nai
▴ 50
0
votes
1
reply
730
views
eQTL Analysis
prediction
eQTL
or
identification
analysis
updated 2.6 years ago by
i.sudbery
19k • written 2.6 years ago by
Nai
▴ 50
0
votes
0
replies
586
views
TPM/FPKM value from HTSeq count
value
FPKM
TPM
2.6 years ago by
Nai
▴ 50
0
votes
4
replies
1.4k
views
VCF file
and
VCF
haploview
2.6 years ago by
Nai
▴ 50
0
votes
3
replies
1.3k
views
Removal of multiple samples from vcf file
VCFtools
2.6 years ago by
Nai
▴ 50
0
votes
13
replies
3.0k
views
Haploview and plink
Plink
Haploview
and
2.6 years ago by
Nai
▴ 50
0
votes
10
replies
2.0k
views
TPM value from DESE2 and significant filterig isssue
DESE2
TPM
value
from
2.6 years ago by
Nai
▴ 50
1
vote
11
replies
2.1k
views
desEQ2 eRROR
featurecount
NA
DESeq2
values
2.6 years ago by
Nai
▴ 50
0
votes
3
replies
1.0k
views
HTseq header
count
Htseq
matrix
updated 2.7 years ago by
cpad0112
21k • written 2.7 years ago by
Nai
▴ 50
0
votes
1
reply
608
views
EQTL analysis
sQTL
eQTL
and
updated 2.7 years ago by
Carambakaracho
★ 3.2k • written 2.7 years ago by
Nai
▴ 50
3
votes
18
replies
3.2k
views
Help creating Deseq2 count matrix from separate files
or
Sample
matrix
updated 2.8 years ago by
Ram
43k • written 2.8 years ago by
Nai
▴ 50
2
votes
3
replies
5.3k
views
R ---issues. on server. BiocManager", "genefilter"
BiocManager
genefilter
updated 2.8 years ago by
Sam
★ 4.7k • written 2.8 years ago by
Nai
▴ 50
4
votes
6
replies
1.3k
views
HT-Seq Batch
Batch
script
HT-Seq
updated 2.8 years ago by
Nitin Narwade
★ 1.6k • written 2.8 years ago by
Nai
▴ 50
0
votes
5
replies
2.4k
views
Getting zero length transcriptome with Velvet-Oases
Oases
RNA-Seq
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Nai
▴ 50
50 results • Page
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