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5.2k
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Comment: C: STAR Alignment Score reduced after trimming
7.6 years ago by dec986 ▴ 380
8
votes
8
replies
5.2k
views
STAR Alignment Score reduced after trimming
STAR RNA-Seq
updated 7.6 years ago by 105k • written 7.6 years ago by ▴ 380
8
votes
1
reply
5.9k
views
STAR => featureCounts pipeline
RNA-Seq
updated 7.6 years ago by 35k • written 7.6 years ago by ▴ 380
3
votes
1
reply
1.7k
views
Trimmomatic destroys right-hand paired-end sequences, how to avoid?
trimmomatic qc
updated 7.6 years ago by ★ 3.2k • written 7.6 years ago by ▴ 380
5
votes
3
replies
1.8k
views
Cannot match machine name with Machine Type
RNA-Seq fastq trimmomatic qc
updated 7.7 years ago by 105k • written 7.7 years ago by ▴ 380
6
votes
11
replies
7.8k
views
stringtie cannot recognize Gencode GTF
RNA-Seq stringtie gencode
updated 7.7 years ago by ▴ 130 • written 7.7 years ago by ▴ 380
0
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0
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7.8k
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Comment: C: stringtie cannot recognize Gencode GTF
7.7 years ago by dec986 ▴ 380
0
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1
reply
7.8k
views
Comment: C: stringtie cannot recognize Gencode GTF
7.7 years ago by dec986 ▴ 380
0
votes
1
reply
7.8k
views
Comment: C: stringtie cannot recognize Gencode GTF
7.7 years ago by dec986 ▴ 380
0
votes
0
replies
7.8k
views
Comment: C: stringtie cannot recognize Gencode GTF
7.7 years ago by dec986 ▴ 380
0
votes
0
replies
7.8k
views
Comment: C: stringtie cannot recognize Gencode GTF
7.7 years ago by dec986 ▴ 380
0
votes
0
replies
3.3k
views
Comment: C: featureCounts not recognizing paired-end alignment file.. why?
7.7 years ago by dec986 ▴ 380
3
votes
2
replies
3.3k
views
featureCounts not recognizing paired-end alignment file.. why?
featurecounts RNA-Seq
7.7 years ago by dec986 ▴ 380
4
votes
1
reply
3.0k
views
Cuffcompare output: thousands of novel transcripts
cuffcompare RNA-Seq
updated 7.7 years ago by 89k • written 7.7 years ago by ▴ 380
0
votes
2
replies
3.3k
views
Tophat with mm10 gencode
RNA-Seq alignment
updated 3.0 years ago by 45k • written 10.0 years ago by ▴ 380
14
votes
5
replies
8.4k
views
How to repair *all* problems identified by FastQC?
RNA-Seq FastQC
updated 7.8 years ago by 6.1k • written 7.8 years ago by ▴ 380
0
votes
0
replies
1.6k
views
Comment: C: how to fix Kmer count from FastQC?
7.8 years ago by dec986 ▴ 380
0
votes
2
replies
1.6k
views
how to fix Kmer count from FastQC?
fastQC RNA-Seq
updated 7.8 years ago by ▴ 30 • written 7.8 years ago by ▴ 380
0
votes
1
reply
2.1k
views
Comment: C: Fastq-Dump Crashes, how to prevent besides continually restarting?
7.8 years ago by dec986 ▴ 380
2
votes
4
replies
2.1k
views
Fastq-Dump Crashes, how to prevent besides continually restarting?
SRA fastq-dump NCBI
7.8 years ago by dec986 ▴ 380
0
votes
1
reply
2.2k
views
Comment: C: Solutions to FastQC diagnosis of Micro-Satellites
7.8 years ago by dec986 ▴ 380
0
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1
reply
2.2k
views
Comment: C: Solutions to FastQC diagnosis of Micro-Satellites
7.8 years ago by dec986 ▴ 380
7
votes
6
replies
2.2k
views
Solutions to FastQC diagnosis of Micro-Satellites
fastqc RNA-Seq
7.8 years ago by dec986 ▴ 380
0
votes
0
replies
1.3k
views
BiSeq manual giving incompatible objects
R BiSeq
7.9 years ago by dec986 ▴ 380
0
votes
0
replies
6.8k
views
Comment: C: 'BiocParallel' did not register default BiocParallelParams
7.9 years ago by dec986 ▴ 380
3
votes
2
replies
6.8k
views
Answer: A: 'BiocParallel' did not register default BiocParallelParams
7.9 years ago by dec986 ▴ 380
5
votes
9
replies
6.8k
views
'BiocParallel' did not register default BiocParallelParams
software error R
7.9 years ago by dec986 ▴ 380
0
votes
0
replies
6.8k
views
Comment: C: 'BiocParallel' did not register default BiocParallelParams
7.9 years ago by dec986 ▴ 380
1
vote
1
reply
6.8k
views
Comment: A: 'BiocParallel' did not register default BiocParallelParams
7.9 years ago by dec986 ▴ 380
0
votes
0
replies
1.4k
views
Comment: C: Searching Gene Ontology for Known Organs
8.5 years ago by dec986 ▴ 380
4
votes
3
replies
1.4k
views
Searching Gene Ontology for Known Organs
gene ontology
8.5 years ago by dec986 ▴ 380
11
votes
4
replies
18k
views
Long Read Length, yet STAR says many reads too short
STAR RNA-Seq single-cell alignment
updated 8.5 years ago by ▴ 570 • written 8.5 years ago by ▴ 380
0
votes
1
reply
18k
views
Comment: C: Long Read Length, yet STAR says many reads too short
8.5 years ago by dec986 ▴ 380
0
votes
3
replies
2.9k
views
Picard MergeBamAlignment failure
picard drop-seq
8.5 years ago by dec986 ▴ 380
0
votes
1
reply
2.9k
views
Answer: A: Picard MergeBamAlignment failure
8.5 years ago by dec986 ▴ 380
0
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0
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3.4k
views
Comment: C: How to get correct options for Picard's AddOrReplaceReadGroups?
8.7 years ago by dec986 ▴ 380
0
votes
2
replies
3.4k
views
How to get correct options for Picard's AddOrReplaceReadGroups?
picard
8.7 years ago by dec986 ▴ 380
1
vote
3
replies
2.6k
views
Quantification of Maps to rRNA and mtDNA
rRNA RNA-Seq alignment star mtRNA
updated 8.8 years ago by 105k • written 8.8 years ago by ▴ 380
0
votes
0
replies
2.6k
views
Comment: C: Quantification of Maps to rRNA and mtDNA
8.8 years ago by dec986 ▴ 380
4
votes
9
replies
4.2k
views
How to plot "normalized read density" vs "insert size"
RNA-Seq
updated 8.8 years ago by 89k • written 8.9 years ago by ▴ 380
0
votes
0
replies
6.8k
views
Comment: C: STAR aligner fails to produce unmapped file
8.8 years ago by dec986 ▴ 380
6
votes
4
replies
6.8k
views
STAR aligner fails to produce unmapped file
STAR
updated 8.8 years ago by 48k • written 8.8 years ago by ▴ 380
0
votes
0
replies
4.2k
views
Comment: C: How to plot "normalized read density" vs "insert size"
8.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.2k
views
Comment: C: How to plot "normalized read density" vs "insert size"
8.8 years ago by dec986 ▴ 380
0
votes
1
reply
4.2k
views
Comment: C: How to plot "normalized read density" vs "insert size"
8.9 years ago by dec986 ▴ 380
0
votes
0
replies
13k
views
Comment: C: edgeR: no residual df: Cannot estimate dispersion
9.0 years ago by dec986 ▴ 380
6
votes
2
replies
13k
views
edgeR: no residual df: Cannot estimate dispersion
edgeR
updated 9.0 years ago by 105k • written 9.0 years ago by ▴ 380
0
votes
2
replies
4.2k
views
Comment: C: Installation of Bcl2Fastq Fails
9.3 years ago by dec986 ▴ 380
0
votes
7
replies
4.2k
views
Installation of Bcl2Fastq Fails
bcl2fastq basespace software error illumina
9.3 years ago by dec986 ▴ 380
0
votes
1
reply
4.2k
views
Comment: A: Installation of Bcl2Fastq Fails
9.3 years ago by dec986 ▴ 380
219 results • Page 4 of 5
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