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2
votes
1
reply
875
views
PACBIO alignment on IGV
Pacbio IGV insertions
updated 2.6 years ago by 100k • written 2.6 years ago by ▴ 170
4
votes
1
reply
990
views
Trio de novo analyses
WGS Trio denovo
updated 2.6 years ago by ▴ 250 • written 2.7 years ago by ▴ 170
0
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0
replies
1.3k
views
Comment: C: VEP is returning MOTIF_NAME values not recognised by Ensembl
3.3 years ago by jan ▴ 170
0
votes
0
replies
1.9k
views
Comment: C: filter_vep not filtering according to my --filter criteria
3.4 years ago by jan ▴ 170
0
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1
reply
1.9k
views
Comment: C: filter_vep not filtering according to my --filter criteria
3.4 years ago by jan ▴ 170
1
vote
4
replies
1.9k
views
filter_vep not filtering according to my --filter criteria
vep filter_vep
updated 3.4 years ago by ★ 2.4k • written 3.4 years ago by ▴ 170
0
votes
1
reply
6.0k
views
Comment: C: Tabix Perl Api Examples
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 170
0
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0
replies
2.9k
views
Comment: C: filter multiple VCF files using snpSift
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 170
0
votes
0
replies
4.3k
views
Comment: C: SnpEff output summary for hundreds of vcfs
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 170
0
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0
replies
4.3k
views
Comment: C: SnpEff output summary for hundreds of vcfs
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 170
0
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1
reply
1.1k
views
Hide small indels from PacBio long read sequencing on IGV
IGV PacBio
4.4 years ago by jan ▴ 170
0
votes
1
reply
8.9k
views
Comment: C: Automatic IGV snapshot script
4.5 years ago by jan ▴ 170
0
votes
1
reply
11k
views
Comment: C: Annotation for SV and CNV
4.5 years ago by jan ▴ 170
7
votes
1
reply
1.8k
views
Prioritizing structural variants and CNV
PacBio CNV SV
updated 4.5 years ago by 47k • written 4.5 years ago by ▴ 170
0
votes
0
replies
2.9k
views
Comment: C: tools to calculate Exac population specific frequency
5.9 years ago by jan ▴ 170
4
votes
8
replies
4.7k
views
annotating strand orientation
vcf sequencing
updated 6.4 years ago by ▴ 660 • written 6.4 years ago by ▴ 170
0
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2
replies
4.7k
views
Comment: A: annotating strand orientation
6.4 years ago by jan ▴ 170
0
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1
reply
2.1k
views
Comment: C: tips for checking variants in IGV
6.9 years ago by jan ▴ 170
3
votes
3
replies
2.1k
views
tips for checking variants in IGV
IGV germline BAM
updated 6.9 years ago by ★ 2.7k • written 6.9 years ago by ▴ 170
1
vote
5
replies
2.9k
views
filter multiple VCF files using snpSift
vcf filter snpSift
updated 20 months ago by 43k • written 8.5 years ago by ▴ 170
1
vote
3
replies
2.9k
views
tools to calculate Exac population specific frequency
EXac MAF sequencing
7.3 years ago by jan ▴ 170
6
votes
3
replies
9.3k
views
TCGA MSI status
TCGA clinical MSI
updated 7.4 years ago by ★ 9.4k • written 7.4 years ago by ▴ 170
0
votes
0
replies
2.5k
views
Comment: C: predict deleteriousness of nonsense variants
7.6 years ago by jan ▴ 170
1
vote
3
replies
2.5k
views
predict deleteriousness of nonsense variants
WGS exome sequencing dbNSFP SIFT Polyphen
updated 7.6 years ago by ▴ 800 • written 7.6 years ago by ▴ 170
1
vote
0
replies
1.5k
views
qsignature : identify sample mix up
sequence vcf
updated 7.7 years ago by 20 • written 7.8 years ago by ▴ 170
1
vote
1
reply
4.4k
views
Comment: C: Interpretation of TCGA clinical data
7.7 years ago by jan ▴ 170
0
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1
reply
3.6k
views
Comment: C: annotating TCGA VCF file
7.7 years ago by jan ▴ 170
2
votes
4
replies
3.6k
views
annotating TCGA VCF file
TCGA VCF Whole exome sequencing germline
updated 7.7 years ago by 22k • written 7.7 years ago by ▴ 170
0
votes
0
replies
1.3k
views
compare variants between duplicate samples
NGS variants
7.8 years ago by jan ▴ 170
0
votes
0
replies
3.5k
views
Comment: C: TCGA germline variants status
8.0 years ago by jan ▴ 170
2
votes
3
replies
3.5k
views
TCGA germline variants status
vcf TCGA sequencing snpSift
updated 20 months ago by 43k • written 8.4 years ago by ▴ 170
0
votes
1
reply
50k
views
Comment: A: Gene Set Clustering based on Functional annotation (GeneSCF)
8.1 years ago by jan ▴ 170
1
vote
3
replies
3.0k
views
Mutalyzer: Multiple hgvs names
mutalyzer HGVS
updated 8.1 years ago by ▴ 140 • written 8.1 years ago by ▴ 170
0
votes
0
replies
2.4k
views
Comment: C: Is there a way to know which variant caller has been used for calling variants i
8.4 years ago by jan ▴ 170
1
vote
1
reply
3.7k
views
Question : Annotating dbNSFP using snpSIFT , problem with index
dbNSFP snpSift
updated 23 months ago by 43k • written 8.4 years ago by ▴ 170
0
votes
0
replies
2.9k
views
Comment: C: filter multiple VCF files using snpSift
8.5 years ago by jan ▴ 170
2
votes
1
reply
4.2k
views
Comment: C: Extract each annotation in 'info' column in snpEff output
8.5 years ago by jan ▴ 170
5
votes
3
replies
4.2k
views
Extract each annotation in 'info' column in snpEff output
snpEff sequencing
updated 20 months ago by 43k • written 8.5 years ago by ▴ 170
0
votes
1
reply
3.5k
views
problem to download 1000genome database using ANNOVAR
annovar
updated 22 months ago by 43k • written 9.0 years ago by ▴ 170
0
votes
0
replies
3.2k
views
Comment: C: Predicting functional effects of a mutation
9.1 years ago by jan ▴ 170
5
votes
2
replies
3.2k
views
Predicting functional effects of a mutation
codon SNP next-gen
updated 23 months ago by 43k • written 9.1 years ago by ▴ 170
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