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2
votes
1
reply
950
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PACBIO alignment on IGV
Pacbio IGV insertions
updated 3.0 years ago by 101k • written 3.0 years ago by ▴ 170
4
votes
1
reply
1.1k
views
Trio de novo analyses
WGS Trio denovo
updated 3.0 years ago by ▴ 280 • written 3.1 years ago by ▴ 170
0
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0
replies
1.5k
views
Comment: C: VEP is returning MOTIF_NAME values not recognised by Ensembl
3.7 years ago by jan ▴ 170
0
votes
0
replies
2.1k
views
Comment: C: filter_vep not filtering according to my --filter criteria
3.8 years ago by jan ▴ 170
0
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1
reply
2.1k
views
Comment: C: filter_vep not filtering according to my --filter criteria
3.8 years ago by jan ▴ 170
1
vote
4
replies
2.1k
views
filter_vep not filtering according to my --filter criteria
vep filter_vep
updated 3.8 years ago by ★ 2.4k • written 3.8 years ago by ▴ 170
0
votes
1
reply
6.2k
views
Comment: C: Tabix Perl Api Examples
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 170
0
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0
replies
3.1k
views
Comment: C: filter multiple VCF files using snpSift
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 170
0
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0
replies
4.6k
views
Comment: C: SnpEff output summary for hundreds of vcfs
updated 4.8 years ago by 44k • written 8.9 years ago by ▴ 170
0
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0
replies
4.6k
views
Comment: C: SnpEff output summary for hundreds of vcfs
updated 4.8 years ago by 44k • written 8.8 years ago by ▴ 170
0
votes
1
reply
1.2k
views
Hide small indels from PacBio long read sequencing on IGV
IGV PacBio
4.8 years ago by jan ▴ 170
0
votes
1
reply
9.2k
views
Comment: C: Automatic IGV snapshot script
4.8 years ago by jan ▴ 170
0
votes
1
reply
12k
views
Comment: C: Annotation for SV and CNV
4.8 years ago by jan ▴ 170
7
votes
1
reply
1.9k
views
Prioritizing structural variants and CNV
PacBio CNV SV
updated 4.9 years ago by 47k • written 4.9 years ago by ▴ 170
0
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0
replies
3.1k
views
Comment: C: tools to calculate Exac population specific frequency
6.3 years ago by jan ▴ 170
4
votes
8
replies
5.0k
views
annotating strand orientation
vcf sequencing
updated 6.8 years ago by ▴ 670 • written 6.8 years ago by ▴ 170
0
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2
replies
5.0k
views
Comment: A: annotating strand orientation
6.8 years ago by jan ▴ 170
0
votes
1
reply
2.2k
views
Comment: C: tips for checking variants in IGV
7.3 years ago by jan ▴ 170
3
votes
3
replies
2.2k
views
tips for checking variants in IGV
IGV germline BAM
updated 7.3 years ago by ★ 2.7k • written 7.3 years ago by ▴ 170
1
vote
5
replies
3.1k
views
filter multiple VCF files using snpSift
vcf filter snpSift
updated 2.0 years ago by 44k • written 8.9 years ago by ▴ 170
1
vote
3
replies
3.1k
views
tools to calculate Exac population specific frequency
EXac MAF sequencing
7.7 years ago by jan ▴ 170
6
votes
3
replies
9.6k
views
TCGA MSI status
TCGA clinical MSI
updated 7.8 years ago by ★ 9.5k • written 7.8 years ago by ▴ 170
0
votes
0
replies
2.6k
views
Comment: C: predict deleteriousness of nonsense variants
8.0 years ago by jan ▴ 170
1
vote
3
replies
2.6k
views
predict deleteriousness of nonsense variants
WGS exome sequencing dbNSFP SIFT Polyphen
updated 8.0 years ago by ▴ 800 • written 8.0 years ago by ▴ 170
1
vote
0
replies
1.5k
views
qsignature : identify sample mix up
sequence vcf
updated 8.1 years ago by 20 • written 8.2 years ago by ▴ 170
1
vote
1
reply
4.5k
views
Comment: C: Interpretation of TCGA clinical data
8.1 years ago by jan ▴ 170
0
votes
1
reply
3.8k
views
Comment: C: annotating TCGA VCF file
8.1 years ago by jan ▴ 170
2
votes
4
replies
3.8k
views
annotating TCGA VCF file
TCGA VCF Whole exome sequencing germline
updated 8.1 years ago by 22k • written 8.1 years ago by ▴ 170
0
votes
0
replies
1.3k
views
compare variants between duplicate samples
NGS variants
8.2 years ago by jan ▴ 170
0
votes
0
replies
3.6k
views
Comment: C: TCGA germline variants status
8.4 years ago by jan ▴ 170
2
votes
3
replies
3.6k
views
TCGA germline variants status
vcf TCGA sequencing snpSift
updated 2.1 years ago by 44k • written 8.8 years ago by ▴ 170
0
votes
1
reply
52k
views
Comment: A: Gene Set Clustering based on Functional annotation (GeneSCF)
8.4 years ago by jan ▴ 170
1
vote
3
replies
3.1k
views
Mutalyzer: Multiple hgvs names
mutalyzer HGVS
updated 8.5 years ago by ▴ 140 • written 8.5 years ago by ▴ 170
0
votes
0
replies
2.5k
views
Comment: C: Is there a way to know which variant caller has been used for calling variants i
8.8 years ago by jan ▴ 170
1
vote
1
reply
3.8k
views
Question : Annotating dbNSFP using snpSIFT , problem with index
dbNSFP snpSift
updated 2.3 years ago by 44k • written 8.8 years ago by ▴ 170
0
votes
0
replies
3.1k
views
Comment: C: filter multiple VCF files using snpSift
8.9 years ago by jan ▴ 170
2
votes
1
reply
4.3k
views
Comment: C: Extract each annotation in 'info' column in snpEff output
8.9 years ago by jan ▴ 170
5
votes
3
replies
4.3k
views
Extract each annotation in 'info' column in snpEff output
snpEff sequencing
updated 2.0 years ago by 44k • written 8.9 years ago by ▴ 170
0
votes
1
reply
3.7k
views
problem to download 1000genome database using ANNOVAR
annovar
updated 2.2 years ago by 44k • written 9.4 years ago by ▴ 170
0
votes
0
replies
3.4k
views
Comment: C: Predicting functional effects of a mutation
9.5 years ago by jan ▴ 170
5
votes
2
replies
3.4k
views
Predicting functional effects of a mutation
codon SNP next-gen
updated 2.3 years ago by 44k • written 9.5 years ago by ▴ 170
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