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0
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0
replies
493
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how convert a GraphPad PRISM parameters in R code?
R statistics regression
14 months ago by star ▴ 350
0
votes
1
reply
619
views
How to make an amino acid sequence using `AAString ()`?
String geom_seqlogo ggplot2 R ggmsa
updated 16 months ago by 13k • written 16 months ago by ▴ 350
3
votes
2
replies
872
views
How convert data into wider table and calculate Dunnet test between samples with multiple concentration?
R aov ANOVA
updated 17 months ago by 45k • written 17 months ago by ▴ 350
3
votes
2
replies
586
views
how count different unique letter for each column?
R
updated 17 months ago by 45k • written 17 months ago by ▴ 350
0
votes
1
reply
467
views
how calculate different amino acids in a aligning format?
R
updated 17 months ago by 45k • written 17 months ago by ▴ 350
13
votes
9
replies
2.0k
views
7 follow
How to convert data in r?
R offtopic
updated 17 months ago by 45k • written 18 months ago by ▴ 350
3
votes
3
replies
1.3k
views
is it correct to normalize batch corrected data?
batch-correction single-cell RUV scGen nomalization
19 months ago by star ▴ 350
0
votes
2
replies
807
views
How combine geom-point with geom-line?
R ggplot2
updated 19 months ago by 45k • written 23 months ago by ▴ 350
2
votes
5
replies
1.3k
views
How to calculate RPKM from RUVr?
RUV R
updated 19 months ago by 45k • written 23 months ago by ▴ 350
1
vote
1
reply
825
views
Which RUVr batch corrected output is better to calculate TPM?
batch-effect RUVSeq R TPM RNA-seq
updated 19 months ago by 45k • written 2.2 years ago by ▴ 350
0
votes
0
replies
446
views
How to run both fileInput and textAreaInput in shinyapp?
r shiny_app shinyapp shiny shiny-server
2.9 years ago by star ▴ 350
3
votes
5
replies
3.6k
views
How extract data from gnomAD for some genes?
gnomAD data variants
updated 3.1 years ago by ▴ 50 • written 5.5 years ago by ▴ 350
3
votes
1
reply
1.3k
views
How select top enriched regions from plotHeatmap outputs?
computeMatrix plotHeatmap R deeptools
updated 3.4 years ago by ★ 1.9k • written 3.4 years ago by ▴ 350
1
vote
4
replies
5.8k
views
Why most of alternative alleles are the alleles with major frequency?
gene genome genetics
updated 2.6 years ago by 45k • written 9.3 years ago by ▴ 350
0
votes
1
reply
771
views
How split regions in half to get at most 1000 bp length?
split linux bedtools R chop
updated 3.9 years ago by 165k • written 3.9 years ago by ▴ 350
1
vote
1
reply
1.6k
views
Read subgroup of HDF5 file with (0,0) group name?
hdf5 rhdf5 dataframe python pandas
updated 4.1 years ago by ★ 2.1k • written 4.8 years ago by ▴ 350
5
votes
2
replies
939
views
How can I give number to data based on length of given columns?
R bedtools
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 350
2
votes
2
replies
1.4k
views
How to calculate number of fragment and its coverage from BAM file?
rna-seq genome bedtools alignment
4.4 years ago by star ▴ 350
7
votes
1
reply
1.4k
views
How convert log2 value to raw value in R?
R
4.6 years ago by star ▴ 350
4
votes
6
replies
2.9k
views
Calculate p-value from Weibull distribution?
statistic p-value
4.6 years ago by star ▴ 350
4
votes
4
replies
1.8k
views
How to calculate probability of a value under Weibull distribution?
R genome HiC statistics
4.7 years ago by star ▴ 350
0
votes
0
replies
1.0k
views
Deconvolution RNA-seq based on Single-RNA-seq?
RNA-Seq genome Single-cell
4.7 years ago by star ▴ 350
1
vote
1
reply
1.1k
views
Find interaction regions from HiC contact matrix?
R HiC Chromosome_Interaction 4C gene
4.7 years ago by star ▴ 350
1
vote
2
replies
1.1k
views
is there any difference between size of RefGenome in UCSC and Ensembl?
ensembl alignment assembly genome_build UCSC
updated 4.9 years ago by 150k • written 4.9 years ago by ▴ 350
1
vote
1
reply
937
views
Kruskal Wallis test with the same p-value for all data?
statistic R Kruskal-Wallis non-parametric
updated 5.1 years ago by 21k • written 5.1 years ago by ▴ 350
4
votes
6
replies
1.9k
views
Repeated Measure ANOVA, GLM,GEE, Linear mixed model, Generalized linear mixed model?
GLM lme statistic ANOVA
updated 5.1 years ago by 87k • written 5.1 years ago by ▴ 350
1
vote
1
reply
3.5k
views
How extract gene TPM from GTEx?
GTEx Gene_expression RNA-seq
updated 5.1 years ago by ▴ 990 • written 5.1 years ago by ▴ 350
4
votes
4
replies
1.8k
views
Get GC content, Conservation score and repeat fraction from UCSC?
UCSC Genomic Integration enrichment
updated 5.2 years ago by ▴ 670 • written 5.2 years ago by ▴ 350
0
votes
6
replies
2.0k
views
why the TPM value is not same?
R RPKM TPM edgeR normalizing
updated 5.3 years ago by 45k • written 5.3 years ago by ▴ 350
0
votes
1
reply
1.1k
views
How to determine low and high variable row and column in a table?
biostatistics methematics basic_statistics
updated 5.4 years ago by 20 • written 5.5 years ago by ▴ 350
4
votes
3
replies
1.3k
views
how make a data table by merging three data sets?
R merge linux data.frame
updated 5.5 years ago by 36k • written 5.7 years ago by ▴ 350
0
votes
1
reply
1.3k
views
How draw Phylogeny tree using genotype file?
phylogenic_tree Tree R Phylogenetic
updated 5.5 years ago by • 0 • written 5.5 years ago by ▴ 350
0
votes
1
reply
917
views
Change color using colRow only for some rows in heatmap?
R heatmap
5.6 years ago by star ▴ 350
3
votes
2
replies
929
views
Not call some variants in some populations?
VCF variantion
updated 5.6 years ago by ▴ 480 • written 5.6 years ago by ▴ 350
9
votes
10
replies
3.1k
views
why there is 0/0 genotyp in VCF file?
VCF GATK Variant
5.6 years ago by star ▴ 350
1
vote
3
replies
1.3k
views
How to remove all characters after a specific pattern?
linux RNA-Seq awk sed
updated 5.6 years ago by ★ 1.3k • written 5.6 years ago by ▴ 350
4
votes
7
replies
2.1k
views
select rows with specific columns and values between two data tables ?
R linux if-statement dplyr ifelse
updated 5.6 years ago by ★ 2.0k • written 5.6 years ago by ▴ 350
3
votes
11
replies
2.0k
views
how to extract unique and the first shared exon in a given gene?
groupby linux dyplr R bedtools
updated 5.6 years ago by ★ 1.2k • written 5.6 years ago by ▴ 350
2
votes
3
replies
2.8k
views
Why DESeq2 filter and remove genes with high count?
R gene edgeR DESeq2
updated 5.7 years ago by 20 • written 8.5 years ago by ▴ 350
1
vote
3
replies
996
views
how to use blastpt between isoforms of the same genes?
blast homology
updated 5.7 years ago by ★ 29k • written 5.7 years ago by ▴ 350
9
votes
3
replies
1.2k
views
How separate one column in two columns?
R linix
updated 5.7 years ago by ▴ 130 • written 5.7 years ago by ▴ 350
4
votes
5
replies
5.6k
views
Getting just fastqc.zip file?
RNA-Seq fastqc
updated 5.8 years ago by ▴ 10 • written 7.1 years ago by ▴ 350
3
votes
4
replies
4.3k
views
which data is more suitable for Heatmap?
RNA-Seq heatmap edgeR next-gen
updated 5.8 years ago by 87k • written 5.8 years ago by ▴ 350
2
votes
3
replies
2.8k
views
Can use log(CPM) of Pairwise comparison as expression level?
RNA-Seq edger gene-expression
5.8 years ago by star ▴ 350
4
votes
7
replies
5.8k
views
How many storage needs for Whole genome sequencing?
Whole-genome-sequencing sequencing
updated 22 months ago by 45k • written 5.8 years ago by ▴ 350
5
votes
8
replies
2.1k
views
What is the statistics test on proportion data
R lme glmer statistics
5.9 years ago by star ▴ 350
5
votes
6
replies
35k
views
terminate called after throwing an instance of 'std::bad_alloc?
bedtools linux data
5.9 years ago by star ▴ 350
5
votes
5
replies
1.3k
views
How to find transcription factor binding for region?
ChIP-seq transcription_factor Ensembl TF
5.9 years ago by star ▴ 350
0
votes
1
reply
1.2k
views
how extract our desirable data from two table?
bedtools overlaps intersect R genomeCoverageBed
updated 5.9 years ago by ▴ 210 • written 5.9 years ago by ▴ 350
2
votes
4
replies
1.2k
views
correlation between data
R dataframe correlation ggplot edgeR
updated 5.9 years ago by • 0 • written 5.9 years ago by ▴ 350
100 results • Page 1 of 2
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