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884
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Get_Homologues
get_homologues homologues clusters
updated 18 months ago by ▴ 490 • written 24 months ago by ▴ 40
11
votes
4
replies
3.5k
views
Construct a gene arrow map to show the gene features
gene map Coordinates Annotation
updated 20 months ago by ▴ 90 • written 8.5 years ago by ▴ 40
0
votes
1
reply
865
views
Use a command on multiple files
bash bbtools bbduk.sh
updated 2.5 years ago by 45k • written 4.0 years ago by ▴ 40
0
votes
1
reply
2.0k
views
Comment: C: How to use sed command on multiple files
4.9 years ago by utkarsh.sood ▴ 40
1
vote
5
replies
2.0k
views
How to use sed command on multiple files
sed multiple files
4.9 years ago by utkarsh.sood ▴ 40
0
votes
1
reply
2.0k
views
Comment: A: How to use sed command on multiple files
4.9 years ago by utkarsh.sood ▴ 40
0
votes
1
reply
2.1k
views
Comment: C: Modify Fasta header
updated 5.8 years ago by 45k • written 9.8 years ago by ▴ 40
1
vote
2
replies
2.8k
views
List of all the sequenced Plasmid from Pseudomonas aeruginosa
sequence
updated 6.2 years ago by 20 • written 9.4 years ago by ▴ 40
1
vote
1
reply
2.3k
views
Software for Quality Check of reads
Illumina Reads Quality Check Prinseq
updated 7.4 years ago by 154k • written 7.4 years ago by ▴ 40
0
votes
0
replies
1.3k
views
Comment: C: DNA replication protein on negative strand
7.6 years ago by utkarsh.sood ▴ 40
0
votes
3
replies
1.3k
views
DNA replication protein on negative strand
Assembly Circular genome OriC
updated 7.6 years ago by 89k • written 7.6 years ago by ▴ 40
0
votes
1
reply
1.6k
views
Split a 6 MB genome into 6 files of 1Mb each
sequence split 1000000 nucleotide
7.8 years ago by utkarsh.sood ▴ 40
0
votes
1
reply
2.4k
views
Pipeline for performing dN/dS analysis on 5000 orthologous proteins
dN/dS orthologous protein pipeline
8.4 years ago by utkarsh.sood ▴ 40
1
vote
3
replies
7.8k
views
How to know the name of the pathways using KO numbers?
KEGG pathway
updated 8.6 years ago by ▴ 220 • written 9.3 years ago by ▴ 40
3
votes
2
replies
4.0k
views
Pathogenicity Island Detection tools
genome sequence blast
updated 3.9 years ago by 45k • written 9.9 years ago by ▴ 40
1
vote
3
replies
2.5k
views
Find genomic Islands
genome sequence
updated 3.9 years ago by 45k • written 9.7 years ago by ▴ 40
3
votes
2
replies
1.5k
views
How sense strand is deciphered after sequencing?
Sequencing SMRT Sense strand Direct strand
updated 9.2 years ago by 48k • written 9.2 years ago by ▴ 40
0
votes
1
reply
5.7k
views
How to calculate dN/dS values?
genome dN/dS PAML pal2nal
updated 9.2 years ago by 5.3k • written 9.2 years ago by ▴ 40
0
votes
0
replies
4.5k
views
Comment: C: Muliple sequence alignment for sequences in more than 4000 files
9.2 years ago by utkarsh.sood ▴ 40
0
votes
2
replies
4.5k
views
Comment: C: Muliple sequence alignment for sequences in more than 4000 files
9.2 years ago by utkarsh.sood ▴ 40
3
votes
7
replies
4.5k
views
Muliple sequence alignment for sequences in more than 4000 files
sequence orthologs clustalW
updated 9.2 years ago by ▴ 150 • written 9.2 years ago by ▴ 40
0
votes
0
replies
1.4k
views
DnaA and rpmH genes on the complement strand in a complete genomic sequence
DnaA gene Complete genome complement strand
9.2 years ago by utkarsh.sood ▴ 40
1
vote
2
replies
2.9k
views
Annotating Core and Pan genome
Core-pan genome Annotation
9.2 years ago by utkarsh.sood ▴ 40
5
votes
3
replies
4.5k
views
Remove duplicate protein sequences having different fasta identifiers
sequence alignment
updated 9.3 years ago by 5.3k • written 9.3 years ago by ▴ 40
0
votes
0
replies
1.7k
views
Unknown Sequence Type In MLST
MLST Sequence Type sequence
9.3 years ago by utkarsh.sood ▴ 40
0
votes
1
reply
2.1k
views
Comment: C: Covergent contig Warning in RAST
9.3 years ago by utkarsh.sood ▴ 40
2
votes
3
replies
2.1k
views
Covergent contig Warning in RAST
genome RAST Convergent Contig SMRT
updated 9.3 years ago by ★ 4.0k • written 9.3 years ago by ▴ 40
1
vote
2
replies
1.3k
views
Why DnaA protein is the first protein in the genebank file?
ncbi
updated 9.3 years ago by ★ 4.0k • written 9.3 years ago by ▴ 40
0
votes
0
replies
2.0k
views
Comment: C: Blastp to know the name of the protein
9.7 years ago by utkarsh.sood ▴ 40
0
votes
2
replies
2.0k
views
Blastp to know the name of the protein
genome blast
updated 3.2 years ago by 45k • written 9.7 years ago by ▴ 40
3
votes
1
reply
2.1k
views
Modify Fasta headers
sequence
updated 3.1 years ago by 45k • written 9.8 years ago by ▴ 40
1
vote
3
replies
7.5k
views
How to check whether a genome is circular
Assembly sequencing genome blast
updated 3.2 years ago by 45k • written 9.9 years ago by ▴ 40
3
votes
2
replies
3.7k
views
Genbank File generation
Assembly sequencing genome sequence SNP
updated 9.9 years ago by ▴ 140 • written 9.9 years ago by ▴ 40
6
votes
2
replies
1.8k
views
Check whether a fasta header has sequence underneath it
sequencing sequence
updated 3.3 years ago by 45k • written 9.9 years ago by ▴ 40
3
votes
3
replies
2.1k
views
Modify Fasta header
sequence fasta
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 40
0
votes
1
reply
2.9k
views
How to predict the function of hypothetical proteins
sequence blast
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 40
0
votes
1
reply
1.8k
views
Comparative Genomic Analysis
genome sequence
updated 3.1 years ago by 45k • written 9.9 years ago by ▴ 40
0
votes
3
replies
3.5k
views
Average Nucleotide Identity for 45 genomes
genome sequence alignment
updated 3.1 years ago by 45k • written 10.0 years ago by ▴ 40
0
votes
0
replies
3.5k
views
Comment: C: Average Nucleotide Identity for 45 genomes
10.0 years ago by utkarsh.sood ▴ 40
3
votes
3
replies
3.4k
views
Identify a sequence as plasmid
genome sequence
updated 3.2 years ago by 45k • written 10.0 years ago by ▴ 40
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