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0
votes
1
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427
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how to calculate TM-score to p-value?
tmscore pdb protein structure
updated 7 months ago by • 0 • written 7 months ago by ▴ 80
1
vote
2
replies
504
views
extract all fasta sequence from db v5
blast protein
updated 11 months ago by 141k • written 11 months ago by ▴ 80
0
votes
0
replies
535
views
ColabFold local heterodimer prediction script making
protein prediction AlphaFold complex
updated 11 months ago by 43k • written 11 months ago by ▴ 80
0
votes
0
replies
337
views
Can I use psiiblast profile as query?
protein blast
12 months ago by Xylanaser ▴ 80
0
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0
replies
375
views
how can i compare methylation sites from pacbio (with MultiMotifMaker output)? or something else?
pacbio methylation MultiMotifMaker
13 months ago by Xylanaser ▴ 80
0
votes
0
replies
849
views
Comment: Comment: Creating a phylogenetic tree following MSA
17 months ago by Xylanaser ▴ 80
0
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1
reply
849
views
Answer: Answer: Creating a phylogenetic tree following MSA
17 months ago by Xylanaser ▴ 80
0
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0
replies
320
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how can I build twin complex of complex of two proteins? (A:B) + (A:B) = (A:B:B:A)
protein complex structure assemble model
17 months ago by Xylanaser ▴ 80
0
votes
0
replies
350
views
search for palindromic sequences - Inverted Repeats Finder or good alternative?
nucleotide palindrome repeat palindromic inverted
17 months ago by Xylanaser ▴ 80
0
votes
1
reply
1.2k
views
Comment: Comment: perl can't see path problem
20 months ago by Xylanaser ▴ 80
0
votes
3
replies
1.2k
views
perl can't see path problem
protein pfamscan
updated 11 months ago by 43k • written 20 months ago by ▴ 80
0
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0
replies
365
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visualizing protein families based on structure-pairwise similarity
visualisation structure protein
22 months ago by Xylanaser ▴ 80
0
votes
0
replies
310
views
Average identity of protein multiple alignment
alignment protein
2.0 years ago by Xylanaser ▴ 80
0
votes
3
replies
733
views
How to do hierarchical clustering for colums in python or excel?
clustering excel python offtopic
updated 2.1 years ago by ★ 2.0k • written 2.1 years ago by ▴ 80
1
vote
4
replies
873
views
BLAST+ taxonomic problem
protein blast
2.3 years ago by Xylanaser ▴ 80
1
vote
0
replies
873
views
Answer: Answer: BLAST+ taxonomic problem
2.3 years ago by Xylanaser ▴ 80
6
votes
4
replies
2.3k
views
model pdb to secondary structure?
structure protein secondary
updated 2.3 years ago by ▴ 370 • written 2.3 years ago by ▴ 80
0
votes
1
reply
873
views
Comment: Comment: BLAST+ taxonomic problem
2.3 years ago by Xylanaser ▴ 80
2
votes
1
reply
557
views
BLAST+ search limited to specific superkingdoms
blast protein
updated 2.3 years ago by 141k • written 2.3 years ago by ▴ 80
0
votes
1
reply
591
views
genebank biopython get /chromosome="22" or /map="22q13.33"
ncbi protein genebank python genpept
updated 2.5 years ago by 100k • written 2.5 years ago by ▴ 80
9
votes
16
replies
9.3k
views
how to get secondary structure from DSSP?
protein dssp pdb structure
updated 2.1 years ago by ▴ 30 • written 4.1 years ago by ▴ 80
3
votes
3
replies
862
views
Pfam - get only one representative fasta sequence per family
pfam fasta protein
updated 2.6 years ago by ★ 27k • written 2.7 years ago by ▴ 80
0
votes
1
reply
869
views
split pdb into submodels
pdb protein
updated 2.6 years ago by ★ 27k • written 2.6 years ago by ▴ 80
0
votes
0
replies
795
views
Comment: Comment: What aa should I use in 2nd structure prediction instead of X
2.6 years ago by Xylanaser ▴ 80
4
votes
2
replies
795
views
What aa should I use in 2nd structure prediction instead of X
structure protein prediction
2.6 years ago by Xylanaser ▴ 80
2
votes
1
reply
571
views
blastpgp -b parameter?
blast
updated 2.7 years ago by ★ 27k • written 2.7 years ago by ▴ 80
0
votes
0
replies
862
views
Comment: Comment: Pfam - get only one representative fasta sequence per family
2.7 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: What does mean HHHHHH in structures?
3.1 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: What does mean HHHHHH in structures?
3.1 years ago by Xylanaser ▴ 80
6
votes
8
replies
1.3k
views
What does mean HHHHHH in structures?
structure protein pdb
updated 3.1 years ago by ★ 27k • written 3.1 years ago by ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: What does mean HHHHHH in structures?
updated 3.1 years ago by 141k • written 3.1 years ago by ▴ 80
0
votes
1
reply
998
views
Comment: C: Way to check if gene A lies in the same ORF as gene B
3.5 years ago by Xylanaser ▴ 80
0
votes
4
replies
998
views
Way to check if gene A lies in the same ORF as gene B
gene protein ORF
3.5 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: ECOD HHMdb to hh-suite
4.1 years ago by Xylanaser ▴ 80
2
votes
2
replies
1.1k
views
ECOD HHMdb to hh-suite
hhm hh-suite hhpred
updated 4.1 years ago by ★ 27k • written 4.1 years ago by ▴ 80
2
votes
1
reply
812
views
Answer: A: Download pnly latest sequences from GenBank
4.4 years ago by Xylanaser ▴ 80
0
votes
0
replies
924
views
Comment: C: secondary structure comparison - how to approach this? / tools?
4.4 years ago by Xylanaser ▴ 80
2
votes
2
replies
924
views
secondary structure comparison - how to approach this? / tools?
secondarystructure python structure protein
updated 4.4 years ago by ★ 27k • written 4.4 years ago by ▴ 80
0
votes
0
replies
873
views
Comment: C: HMP proteomic fasta size? HMP statistics?
4.4 years ago by Xylanaser ▴ 80
0
votes
2
replies
873
views
HMP proteomic fasta size? HMP statistics?
HMP fasta protein
4.4 years ago by Xylanaser ▴ 80
4
votes
2
replies
869
views
standalone CDsearch version?
cdsearch CDD sequence
updated 10 months ago by 43k • written 4.7 years ago by ▴ 80
0
votes
0
replies
2.2k
views
Comment: C: HHpred installation problem
4.8 years ago by Xylanaser ▴ 80
0
votes
0
replies
2.2k
views
Comment: C: HHpred installation problem
4.8 years ago by Xylanaser ▴ 80
0
votes
1
reply
710
views
find bacteria lifestyle
bacteria taxonomy lifestyle
4.9 years ago by Xylanaser ▴ 80
0
votes
0
replies
963
views
Comment: C: Biopython coding, sublist from list dependently by id
5.0 years ago by Xylanaser ▴ 80
2
votes
2
replies
963
views
Biopython coding, sublist from list dependently by id
python coding
updated 5.0 years ago by ★ 2.1k • written 5.0 years ago by ▴ 80
1
vote
3
replies
2.2k
views
HHpred installation problem
protein hhpred
5.0 years ago by Xylanaser ▴ 80
0
votes
1
reply
1.6k
views
HH-Suite conda issue
hh-suite conda
updated 10 months ago by 43k • written 5.2 years ago by ▴ 80
0
votes
0
replies
579
views
Biopython - multiple alignment issue - fliped parts of domain
biopython python sequence alignment protein
5.2 years ago by Xylanaser ▴ 80
0
votes
1
reply
925
views
CUDASW++ query profile - someone know how to build it?
profile sequence protein CUDASW++
updated 5.3 years ago by 20 • written 5.5 years ago by ▴ 80
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