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0
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1
reply
883
views
how to calculate TM-score to p-value?
tmscore pdb protein structure
updated 2.1 years ago by • 0 • written 2.1 years ago by ▴ 80
1
vote
2
replies
950
views
extract all fasta sequence from db v5
blast protein
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 80
0
votes
0
replies
873
views
ColabFold local heterodimer prediction script making
protein prediction AlphaFold complex
updated 2.4 years ago by 45k • written 2.5 years ago by ▴ 80
0
votes
0
replies
536
views
Can I use psiiblast profile as query?
protein blast
2.5 years ago by Xylanaser ▴ 80
0
votes
0
replies
580
views
how can i compare methylation sites from pacbio (with MultiMotifMaker output)? or something else?
pacbio methylation MultiMotifMaker
2.6 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: Creating a phylogenetic tree following MSA
2.9 years ago by Xylanaser ▴ 80
0
votes
1
reply
1.5k
views
Answer: Answer: Creating a phylogenetic tree following MSA
2.9 years ago by Xylanaser ▴ 80
0
votes
0
replies
555
views
how can I build twin complex of complex of two proteins? (A:B) + (A:B) = (A:B:B:A)
protein complex structure assemble model
2.9 years ago by Xylanaser ▴ 80
0
votes
0
replies
623
views
search for palindromic sequences - Inverted Repeats Finder or good alternative?
nucleotide palindrome repeat palindromic inverted
2.9 years ago by Xylanaser ▴ 80
0
votes
1
reply
1.9k
views
Comment: Comment: perl can't see path problem
3.2 years ago by Xylanaser ▴ 80
0
votes
3
replies
1.9k
views
perl can't see path problem
protein pfamscan
updated 2.4 years ago by 45k • written 3.2 years ago by ▴ 80
0
votes
0
replies
576
views
visualizing protein families based on structure-pairwise similarity
visualisation structure protein
3.3 years ago by Xylanaser ▴ 80
0
votes
0
replies
483
views
Average identity of protein multiple alignment
alignment protein
3.5 years ago by Xylanaser ▴ 80
0
votes
3
replies
1.2k
views
How to do hierarchical clustering for colums in python or excel?
clustering excel python offtopic
updated 3.6 years ago by ★ 2.1k • written 3.6 years ago by ▴ 80
1
vote
4
replies
1.4k
views
BLAST+ taxonomic problem
protein blast
3.8 years ago by Xylanaser ▴ 80
1
vote
0
replies
1.4k
views
Answer: Answer: BLAST+ taxonomic problem
3.8 years ago by Xylanaser ▴ 80
6
votes
4
replies
4.0k
views
model pdb to secondary structure?
structure protein secondary
updated 3.8 years ago by ▴ 380 • written 3.8 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Comment: Comment: BLAST+ taxonomic problem
3.8 years ago by Xylanaser ▴ 80
2
votes
1
reply
880
views
BLAST+ search limited to specific superkingdoms
blast protein
updated 3.8 years ago by 154k • written 3.8 years ago by ▴ 80
0
votes
1
reply
890
views
genebank biopython get /chromosome="22" or /map="22q13.33"
ncbi protein genebank python genpept
updated 4.0 years ago by 103k • written 4.0 years ago by ▴ 80
9
votes
16
replies
13k
views
how to get secondary structure from DSSP?
protein dssp pdb structure
updated 3.6 years ago by ▴ 40 • written 5.6 years ago by ▴ 80
3
votes
3
replies
1.5k
views
Pfam - get only one representative fasta sequence per family
pfam fasta protein
updated 4.1 years ago by ★ 30k • written 4.2 years ago by ▴ 80
0
votes
1
reply
1.3k
views
split pdb into submodels
pdb protein
updated 4.1 years ago by ★ 30k • written 4.1 years ago by ▴ 80
0
votes
0
replies
1.2k
views
Comment: Comment: What aa should I use in 2nd structure prediction instead of X
4.1 years ago by Xylanaser ▴ 80
4
votes
2
replies
1.2k
views
What aa should I use in 2nd structure prediction instead of X
structure protein prediction
4.1 years ago by Xylanaser ▴ 80
2
votes
1
reply
828
views
blastpgp -b parameter?
blast
updated 4.2 years ago by ★ 30k • written 4.2 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: Comment: Pfam - get only one representative fasta sequence per family
4.2 years ago by Xylanaser ▴ 80
0
votes
0
replies
2.1k
views
Comment: C: What does mean HHHHHH in structures?
4.6 years ago by Xylanaser ▴ 80
0
votes
0
replies
2.1k
views
Comment: C: What does mean HHHHHH in structures?
4.6 years ago by Xylanaser ▴ 80
6
votes
8
replies
2.1k
views
What does mean HHHHHH in structures?
structure protein pdb
updated 4.6 years ago by ★ 30k • written 4.6 years ago by ▴ 80
0
votes
1
reply
2.1k
views
Comment: C: What does mean HHHHHH in structures?
updated 4.6 years ago by 154k • written 4.6 years ago by ▴ 80
0
votes
1
reply
1.5k
views
Comment: C: Way to check if gene A lies in the same ORF as gene B
5.0 years ago by Xylanaser ▴ 80
0
votes
4
replies
1.5k
views
Way to check if gene A lies in the same ORF as gene B
gene protein ORF
5.0 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: ECOD HHMdb to hh-suite
5.6 years ago by Xylanaser ▴ 80
2
votes
2
replies
1.5k
views
ECOD HHMdb to hh-suite
hhm hh-suite hhpred
updated 5.6 years ago by ★ 30k • written 5.6 years ago by ▴ 80
2
votes
1
reply
1.2k
views
Answer: A: Download pnly latest sequences from GenBank
5.8 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: secondary structure comparison - how to approach this? / tools?
5.8 years ago by Xylanaser ▴ 80
2
votes
2
replies
1.3k
views
secondary structure comparison - how to approach this? / tools?
secondarystructure python structure protein
updated 5.8 years ago by ★ 30k • written 5.8 years ago by ▴ 80
0
votes
0
replies
1.2k
views
Comment: C: HMP proteomic fasta size? HMP statistics?
5.9 years ago by Xylanaser ▴ 80
0
votes
2
replies
1.2k
views
HMP proteomic fasta size? HMP statistics?
HMP fasta protein
5.9 years ago by Xylanaser ▴ 80
4
votes
2
replies
1.3k
views
standalone CDsearch version?
cdsearch CDD sequence
updated 2.4 years ago by 45k • written 6.2 years ago by ▴ 80
0
votes
0
replies
2.9k
views
Comment: C: HHpred installation problem
6.3 years ago by Xylanaser ▴ 80
0
votes
0
replies
2.9k
views
Comment: C: HHpred installation problem
6.3 years ago by Xylanaser ▴ 80
0
votes
1
reply
919
views
find bacteria lifestyle
bacteria taxonomy lifestyle
6.4 years ago by Xylanaser ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: Biopython coding, sublist from list dependently by id
6.4 years ago by Xylanaser ▴ 80
2
votes
2
replies
1.4k
views
Biopython coding, sublist from list dependently by id
python coding
updated 6.4 years ago by ★ 2.2k • written 6.4 years ago by ▴ 80
1
vote
3
replies
2.9k
views
HHpred installation problem
protein hhpred
6.5 years ago by Xylanaser ▴ 80
0
votes
1
reply
2.0k
views
HH-Suite conda issue
hh-suite conda
updated 2.3 years ago by 45k • written 6.7 years ago by ▴ 80
0
votes
0
replies
763
views
Biopython - multiple alignment issue - fliped parts of domain
biopython python sequence alignment protein
6.7 years ago by Xylanaser ▴ 80
0
votes
1
reply
1.2k
views
CUDASW++ query profile - someone know how to build it?
profile sequence protein CUDASW++
updated 6.8 years ago by 20 • written 7.0 years ago by ▴ 80
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