Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
944
views
Comment:  C: impute2 output files to vcf
18 months ago by tarek.mohamed ▴ 280
1
vote
0
replies
944
views
Comment:  C: impute2 output files to vcf
18 months ago by tarek.mohamed ▴ 280
0
votes
1
reply
944
views
Comment:  C: impute2 output files to vcf
18 months ago by tarek.mohamed ▴ 280
0
votes
1
reply
944
views
Comment:  C: impute2 output files to vcf
18 months ago by tarek.mohamed ▴ 280
4
votes
9
replies
944
views
  impute2 output files to vcf
impute2 output vcf file
updated 18 months ago by 34k • written 18 months ago by ▴ 280
2
votes
5
replies
1.1k
views
  Minion reads error rate for indels and snps
minion error rate
updated 2.0 years ago by 20 • written 2.1 years ago by ▴ 280
0
votes
1
reply
1.1k
views
Comment:  C: Minion reads error rate for indels and snps
2.1 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
3.1k
views
  using tximport to prepare salmon quantification files for DEG analysis
RNA-Seq tximport
updated 2.2 years ago by 20 • written 3.2 years ago by ▴ 280
0
votes
1
reply
1.6k
views
  Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
Rsubread BWA NGS
updated 2.2 years ago by ★ 2.7k • written 4.8 years ago by ▴ 280
2
votes
2
replies
1.9k
views
  lgen to ped using plink
plink lgen mismatch
updated 2.3 years ago by 10k • written 3.8 years ago by ▴ 280
3
votes
3
replies
3.9k
views
  Nanopore SNP and indels calling tool
nanopore snps indels calling tools
updated 2.6 years ago by 45k • written 2.9 years ago by ▴ 280
4
votes
1
reply
1.7k
views
  structural variant vcf file comparison
vcf SV
updated 2.6 years ago by 45k • written 2.6 years ago by ▴ 280
0
votes
0
replies
615
views
Comment:  C: Using one bam file with huge coverage, How to generate several bam files with di
2.8 years ago by tarek.mohamed ▴ 280
1
vote
2
replies
615
views
  Using one bam file with huge coverage, How to generate several bam files with different coverage
bam filter SNPs caller
updated 2.8 years ago by 45k • written 2.8 years ago by ▴ 280
0
votes
1
reply
5.7k
views
Comment:  C: bcftools mpileup output format
2.8 years ago by tarek.mohamed ▴ 280
0
votes
3
replies
5.7k
views
  bcftools mpileup output format
bcftools mpileup
2.8 years ago by tarek.mohamed ▴ 280
0
votes
3
replies
1.1k
views
  Percent identity plot
precent identitiy alignment plot
updated 2.9 years ago by 33k • written 2.9 years ago by ▴ 280
0
votes
0
replies
1.4k
views
Comment:  C: Long DNA reads aligned
2.9 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
1.4k
views
Comment:  C: Long DNA reads aligned
2.9 years ago by tarek.mohamed ▴ 280
4
votes
6
replies
1.4k
views
  Long DNA reads aligned
nanopore
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 280
0
votes
4
replies
3.4k
views
  How to extract raw genotype calls from idat or gtc illumina files
gtc files idat files raw genotype calls
updated 3.0 years ago by ▴ 120 • written 3.8 years ago by ▴ 280
0
votes
0
replies
644
views
Comment:  C: amino acid alteration position for SNPs using biomart
3.0 years ago by tarek.mohamed ▴ 280
3
votes
2
replies
644
views
  amino acid alteration position for SNPs using biomart
biomart snps locations aminoacids
updated 3.0 years ago by 8.1k • written 3.0 years ago by ▴ 280
0
votes
9
replies
1.5k
views
  How to increase the speed of subread for DNA whole genome sequence
subread speed DNA sequence
updated 3.1 years ago by ▴ 20 • written 4.8 years ago by ▴ 280
0
votes
1
reply
1.1k
views
  Plotting linkage equilibrium results
linkage disequilibrium plink plotting LD heatmap
updated 3.5 years ago by ▴ 960 • written 3.5 years ago by ▴ 280
0
votes
0
replies
4.3k
views
Comment:  C: linkage disequilibrium analysis
3.5 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
4.3k
views
Comment:  C: linkage disequilibrium analysis
3.6 years ago by tarek.mohamed ▴ 280
2
votes
8
replies
4.3k
views
  linkage disequilibrium analysis
LD SNPs different chromosomes
updated 3.6 years ago by 74k • written 3.6 years ago by ▴ 280
0
votes
0
replies
850
views
Answer:  A: SNPs and Gene Expression
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
1.3k
views
Comment:  C: counting the reads that mapped to a part of transcriptome
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
1.3k
views
Answer:  A: counting the reads that mapped to a part of transcriptome
3.7 years ago by tarek.mohamed ▴ 280
3
votes
0
replies
14k
views
Comment:  C: How is the design in DESeq2 work?
3.7 years ago by tarek.mohamed ▴ 280
3
votes
2
replies
14k
views
Comment:  C: How is the design in DESeq2 work?
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
1.0k
views
Answer:  A: How to start analyzing next-generation DNA and RNA sequencing data?
3.7 years ago by tarek.mohamed ▴ 280
1
vote
3
replies
2.3k
views
  compare genotypes in two vcf files
compare genotypes vcf files
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 280
0
votes
0
replies
2.1k
views
Comment:  C: PLINK2 recode ped flag issue
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
2.1k
views
Answer:  A: PLINK2 recode ped flag issue
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
1.7k
views
Answer:  A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
3.7 years ago by tarek.mohamed ▴ 280
1
vote
1
reply
1.1k
views
Answer:  A: Converting numeric to alphanumeric allele codes
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
711
views
Answer:  A: Counting read ends in RNA-Seq
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
1.6k
views
Comment:  C: NGS alignment image drawing
3.7 years ago by tarek.mohamed ▴ 280
8
votes
1
reply
4.8k
views
Answer:  C: efetch error LWP::Protocol::https not installed
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
1.9k
views
Comment:  C: Download snps within 1Mb from gene
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
1.3k
views
Answer:  A: List of accession numbers for nucleotide sequences to protein sequences using R
3.7 years ago by tarek.mohamed ▴ 280
0
votes
0
replies
907
views
Comment:  C: Finding specific subsets of genes related with known transcription factors
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
9.7k
views
Comment:  C: Downloading gtf file for RefSeq
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
9.7k
views
Comment:  A: Downloading gtf file for RefSeq
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
756
views
Comment:  C: Converting raw counts or DEseq2 output to TxDb container
3.7 years ago by tarek.mohamed ▴ 280
1
vote
1
reply
756
views
Answer:  A: Converting raw counts or DEseq2 output to TxDb container
3.7 years ago by tarek.mohamed ▴ 280
0
votes
1
reply
1.9k
views
Answer:  C: Download snps within 1Mb from gene
3.7 years ago by tarek.mohamed ▴ 280
97 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6