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0
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1
reply
1.9k
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Comment:
Comment: Troubleshooting RNA-seq data with DNA contamination
4 months ago by
tarek.mohamed
▴ 370
1
vote
2
replies
782
views
What is the best aligner for stranded RNASeq
aligner
stranded
RNAseq
updated 19 months ago by
rpolicastro
13k • written 19 months ago by
tarek.mohamed
▴ 370
0
votes
1
reply
652
views
find mouse homologs to human long non coding rnas
human
lncnra
homologs
mouse
updated 23 months ago by
mohammadhassanj
▴ 260 • written 23 months ago by
tarek.mohamed
▴ 370
0
votes
1
reply
4.6k
views
Comment:
C: impute2 output files to vcf
5.0 years ago by
tarek.mohamed
▴ 370
1
vote
0
replies
4.6k
views
Comment:
C: impute2 output files to vcf
5.0 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
4.6k
views
Comment:
C: impute2 output files to vcf
5.0 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
4.6k
views
Comment:
C: impute2 output files to vcf
5.0 years ago by
tarek.mohamed
▴ 370
4
votes
9
replies
4.6k
views
impute2 output files to vcf
vcf
impute2
updated 20 months ago by
Ram
44k • written 5.0 years ago by
tarek.mohamed
▴ 370
2
votes
5
replies
2.2k
views
Minion reads error rate for indels and snps
minion
error
rate
updated 5.5 years ago by
Biostar
20 • written 5.6 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
2.2k
views
Comment:
C: Minion reads error rate for indels and snps
5.6 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
4.6k
views
using tximport to prepare salmon quantification files for DEG analysis
RNA-Seq
tximport
updated 5.7 years ago by
Biostar
20 • written 6.6 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
2.6k
views
Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
Rsubread
BWA
NGS
updated 5.7 years ago by
Gordon Smyth
★ 7.7k • written 8.3 years ago by
tarek.mohamed
▴ 370
2
votes
2
replies
3.2k
views
lgen to ped using plink
plink
lgen
mismatch
updated 5.8 years ago by
zx8754
12k • written 7.2 years ago by
tarek.mohamed
▴ 370
3
votes
3
replies
6.5k
views
Nanopore SNP and indels calling tool
snp
nanopore
indel-calling
updated 18 months ago by
Ram
44k • written 6.4 years ago by
tarek.mohamed
▴ 370
4
votes
1
reply
3.0k
views
structural variant vcf file comparison
vcf
SV
updated 6.1 years ago by
WouterDeCoster
47k • written 6.1 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
1.2k
views
Comment:
C: Using one bam file with huge coverage, How to generate several bam files with di
6.3 years ago by
tarek.mohamed
▴ 370
1
vote
2
replies
1.2k
views
Using one bam file with huge coverage, How to generate several bam files with different coverage
bam
filter
SNPs
caller
updated 6.3 years ago by
WouterDeCoster
47k • written 6.3 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
11k
views
Comment:
C: bcftools mpileup output format
6.3 years ago by
tarek.mohamed
▴ 370
3
votes
3
replies
11k
views
bcftools mpileup output format
bcftools
mpileup
6.3 years ago by
tarek.mohamed
▴ 370
0
votes
3
replies
2.2k
views
Percent identity plot
precent
identitiy
alignment
plot
updated 6.3 years ago by
h.mon
35k • written 6.3 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
3.2k
views
Comment:
C: Long DNA reads aligned
6.4 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
3.2k
views
Comment:
C: Long DNA reads aligned
6.4 years ago by
tarek.mohamed
▴ 370
4
votes
6
replies
3.2k
views
Long DNA reads aligned
nanopore
updated 6.4 years ago by
WouterDeCoster
47k • written 6.4 years ago by
tarek.mohamed
▴ 370
0
votes
4
replies
5.7k
views
How to extract raw genotype calls from idat or gtc illumina files
gtc files
idat files
raw genotype calls
updated 6.4 years ago by
Giulio Genovese
▴ 570 • written 7.3 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
1.4k
views
Comment:
C: amino acid alteration position for SNPs using biomart
6.4 years ago by
tarek.mohamed
▴ 370
3
votes
2
replies
1.4k
views
amino acid alteration position for SNPs using biomart
biomart
snps
locations
aminoacids
updated 6.4 years ago by
Benn
8.3k • written 6.4 years ago by
tarek.mohamed
▴ 370
0
votes
9
replies
2.8k
views
How to increase the speed of subread for DNA whole genome sequence
subread
speed
DNA sequence
updated 6.6 years ago by
andysw90
▴ 20 • written 8.2 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
2.0k
views
Plotting linkage equilibrium results
linkage disequilibrium
plink
plotting
LD heatmap
updated 7.0 years ago by
Hussain Ather
▴ 990 • written 7.0 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
8.5k
views
Comment:
C: linkage disequilibrium analysis
7.0 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
8.5k
views
Comment:
C: linkage disequilibrium analysis
7.0 years ago by
tarek.mohamed
▴ 370
7
votes
8
replies
8.5k
views
linkage disequilibrium analysis
LD
SNPs
different chromosomes
updated 3.4 years ago by
Kevin Blighe
88k • written 7.0 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
1.3k
views
Answer:
A: SNPs and Gene Expression
7.1 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
2.4k
views
Comment:
C: counting the reads that mapped to a part of transcriptome
7.1 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
2.4k
views
Answer:
A: counting the reads that mapped to a part of transcriptome
7.1 years ago by
tarek.mohamed
▴ 370
3
votes
0
replies
35k
views
Comment:
C: How is the design in DESeq2 work?
7.1 years ago by
tarek.mohamed
▴ 370
6
votes
2
replies
35k
views
Comment:
C: How is the design in DESeq2 work?
7.1 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
2.2k
views
Answer:
A: How to start analyzing next-generation DNA and RNA sequencing data?
7.2 years ago by
tarek.mohamed
▴ 370
1
vote
3
replies
3.3k
views
compare genotypes in two vcf files
vcf
genotype
updated 20 months ago by
Ram
44k • written 7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
3.9k
views
Comment:
C: PLINK2 recode ped flag issue
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
3.9k
views
Answer:
A: PLINK2 recode ped flag issue
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
2.8k
views
Answer:
A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
7.2 years ago by
tarek.mohamed
▴ 370
1
vote
1
reply
1.8k
views
Answer:
A: Converting numeric to alphanumeric allele codes
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
1.3k
views
Answer:
A: Counting read ends in RNA-Seq
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
2.3k
views
Comment:
C: NGS alignment image drawing
7.2 years ago by
tarek.mohamed
▴ 370
8
votes
1
reply
8.2k
views
Answer:
C: efetch error LWP::Protocol::https not installed
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
4.2k
views
Comment:
C: Download snps within 1Mb from gene
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
2.1k
views
Answer:
A: List of accession numbers for nucleotide sequences to protein sequences using R
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
0
replies
1.7k
views
Comment:
C: Finding specific subsets of genes related with known transcription factors
7.2 years ago by
tarek.mohamed
▴ 370
1
vote
2
replies
20k
views
Comment:
C: Downloading gtf file for RefSeq
7.2 years ago by
tarek.mohamed
▴ 370
0
votes
1
reply
20k
views
Comment:
A: Downloading gtf file for RefSeq
7.2 years ago by
tarek.mohamed
▴ 370
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