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3
votes
1
reply
1.6k
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Data requirement for gene regulatory network
gene regulatory network systems biology RNA-Seq
updated 3.1 years ago by ▴ 610 • written 7.6 years ago by ▴ 60
0
votes
0
replies
873
views
Extract monophyletic subtree with ETE3 toolkit
ETE3 python3
4.7 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
1.4k
views
Comment: C: Dynamic string replacement issue in parallel for repair.sh bbmap
4.9 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
6.6k
views
Comment: C: How to use BBtools repair.sh on multiple files
4.9 years ago by arunprasanna83 ▴ 60
0
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0
replies
6.6k
views
Comment: C: How to use BBtools repair.sh on multiple files
4.9 years ago by arunprasanna83 ▴ 60
2
votes
2
replies
1.4k
views
Dynamic string replacement issue in parallel for repair.sh bbmap
bbmap gnu-parallel
4.9 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
6.6k
views
Comment: C: How to use BBtools repair.sh on multiple files
4.9 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
6.6k
views
Comment: C: How to use BBtools repair.sh on multiple files
4.9 years ago by arunprasanna83 ▴ 60
2
votes
4
replies
3.9k
views
Remove gene features from a given list
gene annotation gff3
updated 5.1 years ago by 9.3k • written 6.5 years ago by ▴ 60
1
vote
4
replies
4.5k
views
Intramodular connectivity and gene significance in WGCNA
RNA-Seq WGCNA co-expression network
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 60
0
votes
1
reply
4.5k
views
Comment: C: Intramodular connectivity and gene significance in WGCNA
5.7 years ago by arunprasanna83 ▴ 60
1
vote
2
replies
2.1k
views
SRA submitted files
RNA-Seq NGS
updated 5.7 years ago by 20 • written 8.6 years ago by ▴ 60
0
votes
1
reply
1.1k
views
sleuth fails with unusual error
snakePipes Sleuth
updated 2.6 years ago by 45k • written 5.7 years ago by ▴ 60
0
votes
2
replies
2.1k
views
Comment: C: Kallisto in snakePipes instead of salmon
5.7 years ago by arunprasanna83 ▴ 60
9
votes
5
replies
2.1k
views
Kallisto in snakePipes instead of salmon
salmon snakePipes
updated 2.6 years ago by 45k • written 5.7 years ago by ▴ 60
0
votes
0
replies
2.5k
views
Comment: C: RNA-Seq pipeline fails during STAR alignment
5.7 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
2.5k
views
Comment: C: RNA-Seq pipeline fails during STAR alignment
5.7 years ago by arunprasanna83 ▴ 60
1
vote
3
replies
2.5k
views
RNA-Seq pipeline fails during STAR alignment
snakePipes
updated 2.6 years ago by 45k • written 5.7 years ago by ▴ 60
0
votes
1
reply
7.7k
views
Comment: C: /bin/bash/ command not found
5.7 years ago by arunprasanna83 ▴ 60
1
vote
13
replies
7.7k
views
6 follow
/bin/bash/ command not found
snakePipes snakemake
updated 2.6 years ago by 45k • written 5.7 years ago by ▴ 60
0
votes
1
reply
7.7k
views
Comment: C: /bin/bash/ command not found
5.7 years ago by arunprasanna83 ▴ 60
4
votes
1
reply
2.9k
views
Troubleshooting interproscan standalone run
interproscan
updated 2.6 years ago by 45k • written 8.9 years ago by ▴ 60
0
votes
2
replies
5.0k
views
Comment: C: replace gene names in gff file
5.9 years ago by arunprasanna83 ▴ 60
1
vote
6
replies
5.0k
views
replace gene names in gff file
annotation gff augustus genome gene
updated 6 weeks ago by 9.3k • written 5.9 years ago by ▴ 60
0
votes
2
replies
1.5k
views
filter gff3 file for complete gene
assembly next-gen genome
updated 6.4 years ago by 9.3k • written 6.5 years ago by ▴ 60
0
votes
0
replies
3.9k
views
Comment: C: Remove gene features from a given list
6.5 years ago by arunprasanna83 ▴ 60
1
vote
1
reply
1.7k
views
Answer: A: annotate gene feature
6.6 years ago by arunprasanna83 ▴ 60
1
vote
3
replies
1.7k
views
annotate gene feature
gene feature annotation UTR
6.6 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
2.1k
views
Estimate insert size for pacbio long reads
assembly next-gen gapfilling
6.9 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
1.4k
views
collapse lineage_expansion choice to remove paralogs
python ETEtoolkit Phylogeny
updated 7.1 years ago by 20 • written 9.2 years ago by ▴ 60
0
votes
1
reply
2.0k
views
Comment: C: Troubleshooting assembly contigs of large genome
7.2 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
2.0k
views
Comment: C: Troubleshooting assembly contigs of large genome
7.2 years ago by arunprasanna83 ▴ 60
0
votes
5
replies
2.0k
views
Troubleshooting assembly contigs of large genome
genome Assembly sequencing alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
4
votes
14
replies
5.2k
views
Visualizing contig alignment
Assembly alignment genome blast
7.2 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
5.2k
views
Comment: A: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
1
vote
0
replies
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
5.2k
views
Comment: C: Visualizing contig alignment
7.2 years ago by arunprasanna83 ▴ 60
2
votes
2
replies
2.8k
views
Annotation of taxonomy information in phylogeny tree
phylogeny tree annotation ETE
updated 7.8 years ago by ★ 3.0k • written 7.8 years ago by ▴ 60
1
vote
2
replies
1.4k
views
Protein blastp .pin file warning
BLAST protein
updated 8.3 years ago by 20 • written 8.3 years ago by ▴ 60
0
votes
1
reply
1.8k
views
Locate for pattern in protein sequence with Biopython
Biopython fasta pattern matching
updated 8.4 years ago by 48k • written 8.4 years ago by ▴ 60
0
votes
1
reply
2.5k
views
Comment: C: Confusion in SRA submission
8.5 years ago by arunprasanna83 ▴ 60
2
votes
3
replies
2.5k
views
Confusion in SRA submission
RNA-Seq SRA
updated 8.5 years ago by 154k • written 8.5 years ago by ▴ 60
0
votes
2
replies
1.5k
views
Map fasta headers based on sequence match
fasta sequence
8.5 years ago by arunprasanna83 ▴ 60
0
votes
0
replies
4.5k
views
Answer: A: SRA to fastq
8.6 years ago by arunprasanna83 ▴ 60
0
votes
1
reply
1.9k
views
Visualization of Motif synteny
Motifs Synteny
updated 8.7 years ago by ★ 4.0k • written 8.7 years ago by ▴ 60
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