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3
votes
4
replies
2.8k
views
Mapping to repeat consensus sequences?
RepeatModeler RepeatMasker
7.1 years ago by a.rex ▴ 350
0
votes
1
reply
13k
views
Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
7.1 years ago by a.rex ▴ 350
0
votes
1
reply
13k
views
Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
7.1 years ago by a.rex ▴ 350
0
votes
2
replies
13k
views
Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
7.1 years ago by a.rex ▴ 350
0
votes
2
replies
13k
views
Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
7.1 years ago by a.rex ▴ 350
0
votes
1
reply
1.5k
views
Comment: A: Obtaining list of specific TFs from Interpro tsv file.
7.1 years ago by a.rex ▴ 350
1
vote
3
replies
1.5k
views
Obtaining list of specific TFs from Interpro tsv file.
Interpro sequence
7.1 years ago by a.rex ▴ 350
0
votes
0
replies
1.8k
views
Comment: A: Comparing genome assemblies of the same animal
7.1 years ago by a.rex ▴ 350
2
votes
3
replies
1.8k
views
Comparing genome assemblies of the same animal
Assembly
7.1 years ago by a.rex ▴ 350
0
votes
0
replies
1.8k
views
Comment: C: Comparing genome assemblies of the same animal
7.1 years ago by a.rex ▴ 350
4
votes
3
replies
1.4k
views
Perform GO analysis on genome
GO analysis
updated 7.1 years ago by 11k • written 7.1 years ago by ▴ 350
0
votes
0
replies
1.4k
views
Comment: C: Perform GO analysis on genome
7.1 years ago by a.rex ▴ 350
3
votes
1
reply
1.5k
views
How do i extract rows from a bedfile that have a certain bedscore?
bed parse
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 350
1
vote
2
replies
4.1k
views
How do I perform a motif search on a specific fasta sequence?
homer enhancer
updated 7.2 years ago by 45k • written 7.2 years ago by ▴ 350
5
votes
2
replies
2.3k
views
How to search for TF binding sites upstream of specific genes?
sequence
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 350
11
votes
8
replies
11k
views
6 follow
How do I extract Fasta Sequences based on a list of IDs?
grep sequence
updated 3.4 years ago by 22k • written 7.3 years ago by ▴ 350
6
votes
4
replies
2.4k
views
How find correlations between ChIP-seq tracks?
ChIP-Seq analysis
updated 7.3 years ago by ▴ 480 • written 7.3 years ago by ▴ 350
0
votes
1
reply
7.0k
views
Comment: C: How to compare bigwig tracks of two ATAC libraries.
7.3 years ago by a.rex ▴ 350
1
vote
1
reply
7.0k
views
Comment: C: How to compare bigwig tracks of two ATAC libraries.
7.3 years ago by a.rex ▴ 350
8
votes
7
replies
7.0k
views
How to compare bigwig tracks of two ATAC libraries.
atac-seq
updated 7.3 years ago by 89k • written 7.3 years ago by ▴ 350
0
votes
1
reply
5.5k
views
Comment: C: How can I look at find 'open chromatin' from ATAC-seq data using MACS2
7.3 years ago by a.rex ▴ 350
7
votes
5
replies
5.5k
views
How can I look at find 'open chromatin' from ATAC-seq data using MACS2
ATAC-seq MACS2
updated 7.3 years ago by 89k • written 7.3 years ago by ▴ 350
0
votes
0
replies
2.4k
views
Comment: C: How can I map reads only of a certain length?
7.3 years ago by a.rex ▴ 350
0
votes
0
replies
2.4k
views
Comment: C: How can I map reads only of a certain length?
7.3 years ago by a.rex ▴ 350
3
votes
7
replies
2.4k
views
How can I map reads only of a certain length?
bwa atac-seq sequencing
updated 7.3 years ago by 166k • written 7.3 years ago by ▴ 350
0
votes
1
reply
2.4k
views
Comment: C: How can I map reads only of a certain length?
7.3 years ago by a.rex ▴ 350
5
votes
2
replies
4.3k
views
How to demultiplex Unindexed.fastq.gz files?
bcl2fastq illumina
updated 7.3 years ago by 154k • written 7.4 years ago by ▴ 350
0
votes
1
reply
2.3k
views
using gmap to find tss and tes in genome file.
gmap genome transcriptome alignment
updated 7.4 years ago by 20 • written 8.8 years ago by ▴ 350
0
votes
0
replies
4.8k
views
Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
7.9 years ago by a.rex ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
7.9 years ago by a.rex ▴ 350
6
votes
8
replies
4.8k
views
Single - cell RNA-seq analysis - how to look at distribution of gene expression in a t-sne plot?
RNA-Seq
7.9 years ago by a.rex ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
7.9 years ago by a.rex ▴ 350
0
votes
1
reply
4.8k
views
Comment: C: Single - cell RNA-seq analysis - how to look at distribution of gene expression
7.9 years ago by a.rex ▴ 350
7
votes
1
reply
3.1k
views
recon issue for repeatmodeler
recon
updated 8.0 years ago by ▴ 90 • written 9.1 years ago by ▴ 350
0
votes
3
replies
17k
views
Comment: C: How do I go from UniProt ID to retrieving the gene name?
8.0 years ago by a.rex ▴ 350
3
votes
8
replies
17k
views
6 follow
How do I go from UniProt ID to retrieving the gene name?
sequence
8.0 years ago by a.rex ▴ 350
0
votes
1
reply
3.7k
views
Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
1
reply
3.7k
views
Comment: C: How do I access statistics for read counts after demultiplexing in bcl2fastq?
8.2 years ago by a.rex ▴ 350
3
votes
4
replies
3.7k
views
How do I access statistics for read counts after demultiplexing in bcl2fastq?
bcl2fastq
updated 8.2 years ago by 154k • written 8.2 years ago by ▴ 350
0
votes
0
replies
21k
views
Comment: C: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
1
reply
21k
views
Comment: C: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
1
reply
21k
views
Comment: C: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
1
reply
21k
views
Comment: C: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
2
replies
21k
views
Comment: C: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
1
reply
21k
views
Comment: A: Issues installing bcl2fastq?
8.2 years ago by a.rex ▴ 350
0
votes
0
replies
1.6k
views
Comment: C: Separating adapter sequences
8.4 years ago by a.rex ▴ 350
0
votes
2
replies
1.6k
views
Separating adapter sequences
ChIP-Seq sequencing
8.4 years ago by a.rex ▴ 350
1
vote
0
replies
3.9k
views
Comment: C: Fetching NCBI ID for a list of species?
8.4 years ago by a.rex ▴ 350
9
votes
7
replies
3.9k
views
Fetching NCBI ID for a list of species?
gene phylogeny
updated 8.4 years ago by 8.7k • written 8.4 years ago by ▴ 350
0
votes
2
replies
3.9k
views
Comment: C: Fetching NCBI ID for a list of species?
8.4 years ago by a.rex ▴ 350
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