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16
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13
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6.0k
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Why mate-Paired end, Paired-end and Single End reads library to be combined for assembling?
mate-pair paired end single end Assembly
updated 6.3 years ago by 20 • written 7.5 years ago by ▴ 70
0
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1
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2.5k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
0
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0
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2.5k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
0
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2
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2.5k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
0
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0
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2.5k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
0
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1
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2.5k
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Comment: A: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
10
votes
25
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2.5k
views
6 follow
How many A's ,T's , C's and G's in homo sapiens3 reads data set?
genome
6.4 years ago by saranpons3 ▴ 70
0
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0
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2.5k
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Comment: C: How many A's ,T's , C's and G's in homo sapiens3 reads data set?
6.4 years ago by saranpons3 ▴ 70
1
vote
5
replies
3.6k
views
Guidelines to choose K-mer size for De bruijn graph based assembly (2nd generation sequencing reads)?
k-mer de bruijn graph
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 70
0
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1
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3.6k
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Comment: C: Guidelines to choose K-mer size for De bruijn graph based assembly (2nd generati
6.6 years ago by saranpons3 ▴ 70
0
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0
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2.2k
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Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
6.7 years ago by saranpons3 ▴ 70
0
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1
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2.2k
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Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
6.7 years ago by saranpons3 ▴ 70
0
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0
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2.0k
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Comment: C: K-mer counter tool should write k-mers occurring only once to the output file?
6.7 years ago by saranpons3 ▴ 70
0
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1
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2.0k
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Comment: C: K-mer counter tool should write k-mers occurring only once to the output file?
6.7 years ago by saranpons3 ▴ 70
0
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4
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2.0k
views
K-mer counter tool should write k-mers occurring only once to the output file?
kmer kmer counter
updated 6.7 years ago by 100k • written 6.7 years ago by ▴ 70
0
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0
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2.2k
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Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
6.7 years ago by saranpons3 ▴ 70
4
votes
12
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2.2k
views
Where i can find sequencing reads(3rd generation sequencing) data set in which each read length is above 1000bp?
Reads
updated 6.7 years ago by 47k • written 6.7 years ago by ▴ 70
0
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0
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2.2k
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Comment: C: Where i can find sequencing reads(3rd generation sequencing) data set in which e
6.7 years ago by saranpons3 ▴ 70
0
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2
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1.9k
views
Comment: C: Large reads data set which crosses 1TB size?
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 70
6
votes
9
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1.9k
views
Large reads data set which crosses 1TB size?
Genome reads
updated 6.7 years ago by ★ 2.9k • written 6.7 years ago by ▴ 70
0
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0
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1.9k
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Comment: C: Large reads data set which crosses 1TB size?
6.7 years ago by saranpons3 ▴ 70
0
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0
replies
1.9k
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K-mer scala program improvement in Apache Spark
Spark K-mer Counter
7.0 years ago by saranpons3 ▴ 70
1
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0
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2.1k
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Comment: C: Can anybody explain what this statement says?
7.0 years ago by saranpons3 ▴ 70
0
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3
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2.1k
views
Comment: C: Can anybody explain what this statement says?
updated 7.0 years ago by 47k • written 7.0 years ago by ▴ 70
0
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1
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2.1k
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Comment: C: Can anybody explain what this statement says?
7.0 years ago by saranpons3 ▴ 70
5
votes
9
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2.1k
views
Can anybody explain what this statement says?
kmer kmer counter
updated 7.0 years ago by 11k • written 7.0 years ago by ▴ 70
4
votes
8
replies
2.2k
views
Where i can find complete genome of any organism?
genome complete
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 70
0
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2
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1.5k
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Does anybody know de novo assembler which can assemble reads of 300 bp which are generated by Illumina MiSeq series sequencers?
Illumina Denovo Assembly
7.2 years ago by saranpons3 ▴ 70
0
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0
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5.8k
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Comment: C: Memory Usage Of Abyss Assembler
7.2 years ago by saranpons3 ▴ 70
1
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2
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1.5k
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Why we need a distributed assembler based on MPI/Mapreduce when we can store Debruijn graph in a compact way in a single node using FM-index, Bloom …
Assembly denovo debruijn
7.2 years ago by saranpons3 ▴ 70
2
votes
0
replies
1.3k
views
What is the future of De-bruijn graph based assemblers?
Assembly De Bruijn De novo
7.2 years ago by saranpons3 ▴ 70
0
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0
replies
7.4k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
7.2 years ago by saranpons3 ▴ 70
0
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1
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7.4k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
7.2 years ago by saranpons3 ▴ 70
0
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0
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7.4k
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Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
7.2 years ago by saranpons3 ▴ 70
0
votes
1
reply
7.4k
views
Comment: C: What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,
7.2 years ago by saranpons3 ▴ 70
3
votes
8
replies
7.4k
views
What are lowercase a,t,c,g refer to in a complete genome? Should lower case a,t,c,g to be converted to uppercase A,T,C,G before simulation?
genome Assembly
7.2 years ago by saranpons3 ▴ 70
0
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0
replies
2.2k
views
Comment: C: Where i can find complete genome of any organism?
7.2 years ago by saranpons3 ▴ 70
0
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1
reply
1.2k
views
Comment: C: How denovo assemblers handle N's in reads?
7.2 years ago by saranpons3 ▴ 70
1
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3
replies
1.2k
views
How denovo assemblers handle N's in reads?
genome assembly
updated 7.2 years ago by 20k • written 7.2 years ago by ▴ 70
0
votes
3
replies
2.3k
views
Is De-Bruijn graph only the best approach for assembling short reads from 2nd generation sequencing technologies?
Assembly genome sequencing
updated 7.2 years ago by 9.7k • written 7.2 years ago by ▴ 70
0
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0
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2.2k
views
Comment: C: Where i can find complete genome of any organism?
7.2 years ago by saranpons3 ▴ 70
0
votes
0
replies
1.8k
views
Comment: C: Complete genome, simulated reads of any organism for which complete genome is al
7.2 years ago by saranpons3 ▴ 70
0
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0
replies
1.8k
views
Comment: C: Complete genome, simulated reads of any organism for which complete genome is al
7.2 years ago by saranpons3 ▴ 70
6
votes
4
replies
1.8k
views
Complete genome, simulated reads of any organism for which complete genome is already determined
Assembly genome
updated 7.2 years ago by 54k • written 7.2 years ago by ▴ 70
0
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1
reply
2.2k
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Comment: C: Where i can find complete genome of any organism?
7.2 years ago by saranpons3 ▴ 70
0
votes
1
reply
2.2k
views
Comment: C: Where i can find complete genome of any organism?
7.2 years ago by saranpons3 ▴ 70
0
votes
0
replies
7.2k
views
Comment: C: What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website
7.3 years ago by saranpons3 ▴ 70
0
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1
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7.2k
views
Comment: C: What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 70
2
votes
5
replies
7.2k
views
What 2 indicates in 2*150 bp, 2*300 bp maximum read length from Illumina website http://www.illumina.com/systems/sequencing-platforms.html?
illumina read length denovo assembly
updated 7.3 years ago by 47k • written 7.3 years ago by ▴ 70
0
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1
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1.2k
views
Not able to run Contrail assembler with fasta and fastq file formats...
contrail denovo assembly fasta fastq
7.3 years ago by saranpons3 ▴ 70
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