Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
579
views
How Can I Identify Genes in the Top 100 Rank Space from SVD?
Singular-Value-Decomposition Dimension-Reduction SVD
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 260
0
votes
1
reply
2.1k
views
Comment: Comment: How to construct an adjacency matrix based on output of nearest neighbors sear
2.1 years ago by Raheleh ▴ 260
2
votes
5
replies
2.1k
views
How to construct an adjacency matrix based on output of nearest neighbors search method from RANN package?
igraph RANN adjacency-matrix
updated 2.0 years ago by ★ 3.1k • written 2.1 years ago by ▴ 260
0
votes
1
reply
2.1k
views
Comment: Comment: How to construct an adjacency matrix based on output of nearest neighbors sear
2.1 years ago by Raheleh ▴ 260
0
votes
0
replies
59k
views
Comment: Comment: Network plot from expression data in R using igraph
2.1 years ago by Raheleh ▴ 260
0
votes
0
replies
737
views
how to ensure that embedding for the new data is initialized based on the embedding of the existing data in UMAP?
UMAP
2.3 years ago by Raheleh ▴ 260
0
votes
1
reply
1.6k
views
Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
3.5 years ago by Raheleh ▴ 260
0
votes
0
replies
1.6k
views
Comment: Comment: How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
3.5 years ago by Raheleh ▴ 260
0
votes
4
replies
1.6k
views
How to resolve this Error in checkFullRank(modelMatrix) in DESeq2 ?
Batch correction DESeq2 RNAseq
updated 3.5 years ago by 6.6k • written 3.5 years ago by ▴ 260
0
votes
1
reply
7.6k
views
Comment: Comment: TMM-Normalization
3.9 years ago by Raheleh ▴ 260
4
votes
8
replies
2.7k
views
how to get ride of duplicated genes when we also have duplicated Ensemble ID in the expression profile?
RNA-Seq duplicated ENSEMBLE ID collapseRows
updated 3.9 years ago by ▴ 40 • written 5.0 years ago by ▴ 260
1
vote
1
reply
930
views
problem with contrastive principal component analysis (cPCA)
scPCA cPCA
updated 4.3 years ago by 89k • written 4.3 years ago by ▴ 260
0
votes
0
replies
1.2k
views
How RNAseq input file for ssGSAE should be normalized?
VST ssGSEA normalization
4.2 years ago by Raheleh ▴ 260
2
votes
1
reply
1.2k
views
Why the result of GSEA and ssGSEA is different?
ssgsea gsea
updated 2.2 years ago by • 0 • written 4.6 years ago by ▴ 260
0
votes
0
replies
1.0k
views
How to do differential CNA analysis?
CNA GISTIC Differential analysis
4.6 years ago by Raheleh ▴ 260
0
votes
0
replies
2.7k
views
Comment: C: Copy number differences between groups
4.6 years ago by Raheleh ▴ 260
0
votes
0
replies
890
views
Normalizing multiple conditons all together
RMA microarray time-series
updated 2.3 years ago by 45k • written 4.9 years ago by ▴ 260
0
votes
0
replies
8.6k
views
Answer: A: COnverting mouse gene ID to Human gene ID
4.9 years ago by Raheleh ▴ 260
0
votes
1
reply
48k
views
Comment: C: PCA in a RNA seq analysis
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.4k
views
Comment: C: Finding a gene signature among multiple group
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.4k
views
Comment: C: Finding a gene signature among multiple group
5.0 years ago by Raheleh ▴ 260
0
votes
0
replies
2.4k
views
Comment: C: Finding a gene signature among multiple group
5.0 years ago by Raheleh ▴ 260
7
votes
7
replies
2.4k
views
Finding a gene signature among multiple group
SAM RNAseq signature
updated 2.8 years ago by ★ 1.3k • written 5.0 years ago by ▴ 260
0
votes
0
replies
3.2k
views
Comment: C: Methods for contrasting gene expression profiles between multiple groups
5.0 years ago by Raheleh ▴ 260
0
votes
0
replies
2.4k
views
Comment: C: Finding a gene signature among multiple group
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.7k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.7k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
5.0 years ago by Raheleh ▴ 260
0
votes
0
replies
2.7k
views
Comment: C: how to get ride of duplicated genes when we also have duplicated Ensemble ID in
5.0 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: Batch correction using DESeq2
5.2 years ago by Raheleh ▴ 260
5
votes
9
replies
2.2k
views
Batch correction using DESeq2
RNA-Seq deseq2 batch vst
5.2 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: Batch correction for one condition in DESeq2
5.2 years ago by Raheleh ▴ 260
1
vote
1
reply
39k
views
Comment: C: Batch correction in DESeq2
5.2 years ago by Raheleh ▴ 260
0
votes
1
reply
2.2k
views
Comment: C: Batch correction for one condition in DESeq2
5.2 years ago by Raheleh ▴ 260
0
votes
0
replies
2.2k
views
Comment: C: Batch correction for one condition in DESeq2
5.2 years ago by Raheleh ▴ 260
0
votes
0
replies
14k
views
Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
5.2 years ago by Raheleh ▴ 260
0
votes
0
replies
37k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
5.2 years ago by Raheleh ▴ 260
0
votes
0
replies
37k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
5.2 years ago by Raheleh ▴ 260
0
votes
0
replies
37k
views
Comment: C: How to create a mutation landscape (waterfall) plot with GenVisR
5.3 years ago by Raheleh ▴ 260
0
votes
0
replies
7.1k
views
Comment: C: Gene expression data set scaling
5.3 years ago by Raheleh ▴ 260
0
votes
1
reply
1.4k
views
Why some genes with negative fold change are assigned as activated upstream regulators by IPA?
IPA Upstream regulator activation z-score
5.4 years ago by Raheleh ▴ 260
0
votes
1
reply
10k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
5.5 years ago by Raheleh ▴ 260
24
votes
16
replies
10k
views
Only doing log2 transformation for RNAseq read count data without normalizing by DESeq2 ??!
RNA-Seq readcount deseq2 log2
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 260
0
votes
1
reply
10k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 5.5 years ago by 45k • written 5.5 years ago by ▴ 260
0
votes
2
replies
10k
views
Comment: C: Only doing log2 transformation for RNAseq read count data without normalizing by
updated 5.5 years ago by 45k • written 5.5 years ago by ▴ 260
0
votes
0
replies
3.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.6 years ago by Raheleh ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: Why Wilcox.test keep giving (p-val = 0.1) even when there is significant differe
5.6 years ago by Raheleh ▴ 260
10
votes
6
replies
3.2k
views
Why Wilcox.test keep giving (p-val = 0.1) even when there is significant difference between the data?
wilcox.test ssGSEA significant level ggplot
updated 5.6 years ago by ▴ 290 • written 5.6 years ago by ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.6 years ago by Raheleh ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.6 years ago by Raheleh ▴ 260
0
votes
1
reply
3.2k
views
Comment: C: how to plot lollipop in which dots show mean/median for each variable?
5.6 years ago by Raheleh ▴ 260
121 results • Page 1 of 3
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6