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0
votes
1
reply
514
views
Get Phred Score/Base Quality for BAM File Per base
phred score
updated 8 months ago by 156k • written 8 months ago by ▴ 60
0
votes
0
replies
309
views
Chromosomal Position to rsID and Allele Frequency
frequency allele snps biomart
10 months ago by gtasource ▴ 60
0
votes
3
replies
447
views
VCF File Showing SNP, but Genotyping Column Not Representing Said SNP
VCF
updated 15 months ago by 40k • written 15 months ago by ▴ 60
0
votes
0
replies
301
views
Finding Allele Frequencies for Multiple SNPs
SNPs
15 months ago by gtasource ▴ 60
0
votes
0
replies
489
views
Online Sequence Alignment of COVID-19 and Other Viruses (H1N1, Ebola, ect)
Sequence
updated 3 months ago by 40k • written 3.4 years ago by ▴ 60
1
vote
1
reply
2.0k
views
How to Find Cell Type From Marker Genes (SC-RNA-Seq)
sc-rna-seq
updated 3.8 years ago by 86k • written 3.8 years ago by ▴ 60
1
vote
1
reply
1.2k
views
How to Choose PCs from a HeatMap
RNA-seq single-cell
updated 27 days ago by 40k • written 3.8 years ago by ▴ 60
0
votes
0
replies
780
views
Masked ENV_NT for Kraken2
kraken2
3.9 years ago by gtasource ▴ 60
1
vote
3
replies
1.2k
views
Removing Unmapped Reads from SAM File (SAMTools)
Samtools
updated 3.9 years ago by 13k • written 3.9 years ago by ▴ 60
1
vote
2
replies
2.5k
views
Merging Paired-end Reads for Metagenomics
sequencing
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 60
5
votes
3
replies
4.6k
views
Metagenomic Assembly and Kraken2
Kraken2 Metagenomic
updated 3.9 years ago by 34k • written 3.9 years ago by ▴ 60
0
votes
4
replies
2.0k
views
This File Contains Inconsistent Headers
fastq fastq headers fastq trimming
updated 4.0 years ago by 13k • written 4.0 years ago by ▴ 60
0
votes
0
replies
831
views
Metaphlan2 Not Producing Results
metaphlan2 metagenome metagenomics
4.0 years ago by gtasource ▴ 60
0
votes
2
replies
854
views
Is It a Necessity to Remove Human Data from Samples for Metagenomic Analysis?
metagenomics sequencing
4.0 years ago by gtasource ▴ 60
3
votes
3
replies
2.1k
views
FASTX Trimming First and Last X Bases
FASTQ FASTX Trimming
updated 4.0 years ago by 134k • written 4.0 years ago by ▴ 60
4
votes
3
replies
1.5k
views
featureCount Too Many Genes
featureCount differential expression
updated 4.1 years ago by 47k • written 4.1 years ago by ▴ 60
2
votes
2
replies
1.7k
views
GMAP or Bowtie index from FASTA of genes
GMAP bowtie
updated 4.6 years ago by 20 • written 4.7 years ago by ▴ 60
3
votes
4
replies
1.1k
views
Differential Expression of Single Gene
expression gene expression de-seq
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 60
0
votes
1
reply
2.6k
views
Parsing RepeatMasker Output Files
repeatmasker fasta
4.7 years ago by gtasource ▴ 60
0
votes
1
reply
949
views
Mapping Gene Models Back to a Reference Genome of Closely Related Species
bowtie gmap
updated 4.7 years ago by ★ 2.5k • written 4.7 years ago by ▴ 60
0
votes
5
replies
2.8k
views
Optimize AUGUSTUS Segmentation Fault
AUGUSTUS BRAKER
4.8 years ago by gtasource ▴ 60
0
votes
1
reply
825
views
Coordinates for Gene in Unannotated Reference FASTA
BLAT BLAST ANNOTATION
4.9 years ago by gtasource ▴ 60
0
votes
1
reply
954
views
DE Gene List to Regulatory Network
DE gene regulatory network edgeR R
5.0 years ago by gtasource ▴ 60
0
votes
4
replies
1.8k
views
Only One Blast Result Per Query (Lowest E-Value)
BLAST
5.0 years ago by gtasource ▴ 60
0
votes
1
reply
970
views
BLAT Results to BED for each Gene
blat
5.0 years ago by gtasource ▴ 60
0
votes
2
replies
777
views
FASTA to Gene Names (Is BLAST the best option)
BLAST
updated 5.0 years ago by 20 • written 5.0 years ago by ▴ 60
1
vote
1
reply
1.0k
views
Too Many StringTie Genes
Stringtie
5.0 years ago by gtasource ▴ 60
0
votes
3
replies
1.8k
views
BLAST Output of the Alignment
BLAST
5.0 years ago by gtasource ▴ 60
6
votes
6
replies
4.6k
views
logCPM to RPKM
RNA-Seq
updated 5.1 years ago by 103k • written 5.1 years ago by ▴ 60
2
votes
10
replies
6.2k
views
Introns from Exons of GTF File
gtf bedtools
updated 6 months ago by 40k • written 5.2 years ago by ▴ 60
4
votes
1
reply
2.3k
views
Bedtools -Sorted Genome File
bedtools
updated 5.2 years ago by 16k • written 5.2 years ago by ▴ 60
2
votes
1
reply
1.3k
views
Bedtools Slop for Specific Features
bedtools awk
updated 3 months ago by 40k • written 5.2 years ago by ▴ 60
6
votes
3
replies
6.7k
views
Quick Way to Annotate a Bed File
bed
updated 5.2 years ago by ★ 1.1k • written 5.2 years ago by ▴ 60
2
votes
4
replies
1.6k
views
Bedtools Flank Unexpected Behavior
bedtools
updated 5.2 years ago by 76k • written 5.2 years ago by ▴ 60
0
votes
0
replies
1.3k
views
Frequency of CHH, CHG methylation in Comparison to CPG
methylation
5.2 years ago by gtasource ▴ 60
2
votes
5
replies
1.7k
views
Expanding Genomic Coordinates Using Bedtools
bed bedtools
updated 6 months ago by 40k • written 5.3 years ago by ▴ 60
1
vote
4
replies
5.0k
views
edgeR RPKM Values
bioconductor R edgeR
updated 5.3 years ago by 20 • written 5.5 years ago by ▴ 60
2
votes
1
reply
4.3k
views
Bedtools Coverage Read Counts
bedtools
updated 5.5 years ago by 86k • written 5.5 years ago by ▴ 60
2
votes
4
replies
1.5k
views
Finding difference in read depth between two BAM files
sequencing bam bedtools
updated 5.8 years ago by 156k • written 5.8 years ago by ▴ 60
39 results • Page 1 of 1
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