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reply
1.2k
views
Get Phred Score/Base Quality for BAM File Per base
phred score
updated 2.3 years ago by 166k • written 2.3 years ago by ▴ 60
0
votes
0
replies
626
views
Chromosomal Position to rsID and Allele Frequency
frequency allele snps biomart
2.5 years ago by gtasource ▴ 60
0
votes
3
replies
849
views
VCF File Showing SNP, but Genotyping Column Not Representing Said SNP
VCF
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 60
0
votes
0
replies
496
views
Finding Allele Frequencies for Multiple SNPs
SNPs
2.9 years ago by gtasource ▴ 60
0
votes
0
replies
669
views
Online Sequence Alignment of COVID-19 and Other Viruses (H1N1, Ebola, ect)
Sequence
updated 23 months ago by 45k • written 5.0 years ago by ▴ 60
1
vote
1
reply
2.3k
views
How to Find Cell Type From Marker Genes (SC-RNA-Seq)
sc-rna-seq
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 60
1
vote
1
reply
1.7k
views
How to Choose PCs from a HeatMap
RNA-seq single-cell
updated 20 months ago by 45k • written 5.4 years ago by ▴ 60
0
votes
0
replies
982
views
Masked ENV_NT for Kraken2
kraken2
5.5 years ago by gtasource ▴ 60
1
vote
3
replies
1.7k
views
Removing Unmapped Reads from SAM File (SAMTools)
Samtools
updated 5.5 years ago by 14k • written 5.5 years ago by ▴ 60
1
vote
2
replies
3.1k
views
Merging Paired-end Reads for Metagenomics
sequencing
updated 5.6 years ago by 20 • written 5.6 years ago by ▴ 60
5
votes
3
replies
6.6k
views
Metagenomic Assembly and Kraken2
Kraken2 Metagenomic
updated 5.6 years ago by 35k • written 5.6 years ago by ▴ 60
0
votes
4
replies
2.8k
views
This File Contains Inconsistent Headers
fastq fastq headers fastq trimming
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 60
0
votes
0
replies
1.1k
views
Metaphlan2 Not Producing Results
metaphlan2 metagenome metagenomics
5.6 years ago by gtasource ▴ 60
0
votes
2
replies
1.2k
views
Is It a Necessity to Remove Human Data from Samples for Metagenomic Analysis?
metagenomics sequencing
5.6 years ago by gtasource ▴ 60
3
votes
3
replies
3.1k
views
FASTX Trimming First and Last X Bases
FASTQ FASTX Trimming
updated 5.6 years ago by 151k • written 5.6 years ago by ▴ 60
4
votes
3
replies
2.0k
views
featureCount Too Many Genes
featureCount differential expression
updated 5.8 years ago by 48k • written 5.8 years ago by ▴ 60
2
votes
2
replies
2.2k
views
GMAP or Bowtie index from FASTA of genes
GMAP bowtie
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 60
3
votes
4
replies
1.6k
views
Differential Expression of Single Gene
expression gene expression de-seq
updated 6.3 years ago by 12k • written 6.3 years ago by ▴ 60
0
votes
1
reply
2.9k
views
Parsing RepeatMasker Output Files
repeatmasker fasta
6.3 years ago by gtasource ▴ 60
0
votes
1
reply
1.3k
views
Mapping Gene Models Back to a Reference Genome of Closely Related Species
bowtie gmap
updated 6.4 years ago by ★ 2.6k • written 6.4 years ago by ▴ 60
0
votes
5
replies
3.8k
views
Optimize AUGUSTUS Segmentation Fault
AUGUSTUS BRAKER
6.4 years ago by gtasource ▴ 60
0
votes
1
reply
1.1k
views
Coordinates for Gene in Unannotated Reference FASTA
BLAT BLAST ANNOTATION
6.6 years ago by gtasource ▴ 60
0
votes
1
reply
1.2k
views
DE Gene List to Regulatory Network
DE gene regulatory network edgeR R
6.6 years ago by gtasource ▴ 60
0
votes
4
replies
2.2k
views
Only One Blast Result Per Query (Lowest E-Value)
BLAST
6.6 years ago by gtasource ▴ 60
0
votes
1
reply
1.3k
views
BLAT Results to BED for each Gene
blat
6.6 years ago by gtasource ▴ 60
0
votes
2
replies
1.0k
views
FASTA to Gene Names (Is BLAST the best option)
BLAST
updated 6.6 years ago by 20 • written 6.6 years ago by ▴ 60
1
vote
1
reply
1.2k
views
Too Many StringTie Genes
Stringtie
6.6 years ago by gtasource ▴ 60
0
votes
3
replies
2.2k
views
BLAST Output of the Alignment
BLAST
6.6 years ago by gtasource ▴ 60
6
votes
6
replies
5.5k
views
logCPM to RPKM
RNA-Seq
updated 6.8 years ago by 105k • written 6.8 years ago by ▴ 60
2
votes
10
replies
8.4k
views
Introns from Exons of GTF File
gtf bedtools
updated 2.1 years ago by 45k • written 6.8 years ago by ▴ 60
4
votes
1
reply
2.6k
views
Bedtools -Sorted Genome File
bedtools
updated 6.8 years ago by 16k • written 6.8 years ago by ▴ 60
2
votes
1
reply
1.7k
views
Bedtools Slop for Specific Features
bedtools awk
updated 23 months ago by 45k • written 6.8 years ago by ▴ 60
7
votes
3
replies
8.7k
views
Quick Way to Annotate a Bed File
bed
updated 6.8 years ago by ★ 1.1k • written 6.8 years ago by ▴ 60
2
votes
4
replies
2.1k
views
Bedtools Flank Unexpected Behavior
bedtools
updated 6.8 years ago by 88k • written 6.8 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Frequency of CHH, CHG methylation in Comparison to CPG
methylation
6.9 years ago by gtasource ▴ 60
2
votes
5
replies
2.4k
views
Expanding Genomic Coordinates Using Bedtools
bed bedtools
updated 2.1 years ago by 45k • written 6.9 years ago by ▴ 60
1
vote
4
replies
5.7k
views
edgeR RPKM Values
bioconductor R edgeR
updated 6.9 years ago by 20 • written 7.1 years ago by ▴ 60
2
votes
1
reply
4.9k
views
Bedtools Coverage Read Counts
bedtools
updated 7.2 years ago by 89k • written 7.2 years ago by ▴ 60
2
votes
4
replies
1.9k
views
Finding difference in read depth between two BAM files
sequencing bam bedtools
updated 7.4 years ago by 166k • written 7.4 years ago by ▴ 60
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