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READ GROUP in GATK
Variant-calling GATK
updated 16 months ago by 44k • written 16 months ago by ▴ 160
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0
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1.4k
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Comment: Comment: VCF file CSQ flag
19 months ago by Payal ▴ 160
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1
reply
1.4k
views
Comment: Comment: VCF file CSQ flag
19 months ago by Payal ▴ 160
0
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2
replies
1.4k
views
Comment: Comment: VCF file CSQ flag
updated 19 months ago by 148k • written 19 months ago by ▴ 160
2
votes
8
replies
1.4k
views
VCF file CSQ flag
vcf exome-sequencing
updated 19 months ago by 44k • written 19 months ago by ▴ 160
3
votes
4
replies
3.4k
views
Nextseq and Miseq data output difference?
sequencing
updated 23 months ago by ▴ 60 • written 5.9 years ago by ▴ 160
0
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1
reply
3.1k
views
Comment: Comment: Pearson Correlation Single cell seurat
2.3 years ago by Payal ▴ 160
0
votes
3
replies
3.1k
views
Pearson Correlation Single cell seurat
singlecell seurat
updated 2.3 years ago by 4.7k • written 2.3 years ago by ▴ 160
5
votes
10
replies
4.7k
views
HIsat2 bam and summary output - multiple output file type
RNA-Seq snakemake sequencing
updated 3.0 years ago by 105k • written 5.5 years ago by ▴ 160
0
votes
1
reply
748
views
ChIPseq annotation with replicates
chipseq
updated 3.0 years ago by 11k • written 3.0 years ago by ▴ 160
0
votes
1
reply
717
views
Deseq2 model matrix error
rnaseq
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 160
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0
replies
770
views
Comment: A: P-adjusted value of 1
4.0 years ago by Payal ▴ 160
0
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2
replies
770
views
P-adjusted value of 1
next-gen sequencing single-cell
4.0 years ago by Payal ▴ 160
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0
replies
5.9k
views
Answer: A: Seurat FindMarkers avg_logFC for integrated dataset
4.4 years ago by Payal ▴ 160
1
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2
replies
5.9k
views
Seurat FindMarkers avg_logFC for integrated dataset
R RNA-Seq sequencing
updated 2.8 years ago by ▴ 10 • written 4.4 years ago by ▴ 160
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1
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6.9k
views
Comment: A: Seurat DefaultAssay integrated vs RNA
4.4 years ago by Payal ▴ 160
5
votes
5
replies
6.9k
views
Seurat DefaultAssay integrated vs RNA
RNA-Seq sequencing R
4.4 years ago by Payal ▴ 160
0
votes
0
replies
2.6k
views
Comment: C: Estimated Number of Cells in 10X vs Cells in Seurat
4.4 years ago by Payal ▴ 160
0
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1
reply
2.6k
views
Comment: A: Estimated Number of Cells in 10X vs Cells in Seurat
4.4 years ago by Payal ▴ 160
1
vote
4
replies
2.6k
views
Estimated Number of Cells in 10X vs Cells in Seurat
R Single-cell sequencing
4.4 years ago by Payal ▴ 160
0
votes
0
replies
12k
views
Comment: C: DEseq three-group comparison
4.5 years ago by Payal ▴ 160
3
votes
0
replies
65k
views
Answer: A: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
4.6 years ago by Payal ▴ 160
47
votes
9
replies
65k
views
FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
next-gen RNA-Seq single-cell R
updated 17 months ago by ▴ 160 • written 5.1 years ago by ▴ 160
0
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0
replies
1.4k
views
Comment: C: Is Pseudotime analysis most applicable to time-series experiments?
4.6 years ago by Payal ▴ 160
2
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3
replies
1.4k
views
Is Pseudotime analysis most applicable to time-series experiments?
RNA-Seq single-cell
updated 4.6 years ago by 27k • written 4.6 years ago by ▴ 160
0
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0
replies
1.9k
views
Choose root nodes in Monocle3
trajectory Single cell RNA-Seq
4.7 years ago by Payal ▴ 160
1
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0
replies
2.9k
views
Comment: C: Unequal sample sizes Deseq2
4.8 years ago by Payal ▴ 160
2
votes
2
replies
2.9k
views
Unequal sample sizes Deseq2
RNA-Seq sequencing
updated 4.8 years ago by 86k • written 4.8 years ago by ▴ 160
5
votes
4
replies
1.2k
views
Downstream RNA seq analysis
RNA-Seq
updated 4.9 years ago by ★ 7.1k • written 4.9 years ago by ▴ 160
1
vote
0
replies
9.1k
views
Answer: A: htseq-count cannot find pysam
5.0 years ago by Payal ▴ 160
0
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1
reply
3.4k
views
Comment: C: Cellranger data to Monocle Pseudotime
5.0 years ago by Payal ▴ 160
2
votes
6
replies
3.4k
views
Cellranger data to Monocle Pseudotime
single cell rna-seq sequencing
updated 5.0 years ago by ★ 18k • written 5.0 years ago by ▴ 160
0
votes
1
reply
65k
views
Comment: C: FindConservedMarkers vs FindMarkers vs FindAllMarkers Seurat
5.1 years ago by Payal ▴ 160
1
vote
0
replies
4.7k
views
Comment: C: HIsat2 bam and summary output - multiple output file type
5.5 years ago by Payal ▴ 160
0
votes
0
replies
4.7k
views
Comment: C: HIsat2 bam and summary output - multiple output file type
5.5 years ago by Payal ▴ 160
0
votes
1
reply
4.7k
views
Comment: C: HIsat2 bam and summary output - multiple output file type
5.5 years ago by Payal ▴ 160
0
votes
1
reply
4.7k
views
Comment: C: HIsat2 bam and summary output - multiple output file type
5.5 years ago by Payal ▴ 160
9
votes
6
replies
5.1k
views
6 follow
Can we concatenate two fastq files from same sample but different runs
sequencing RNA-Seq
updated 5.6 years ago by ▴ 30 • written 6.6 years ago by ▴ 160
0
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0
replies
4.3k
views
Answer: A: error opening file after QIIME script: add_qiime_labels.py
5.8 years ago by Payal ▴ 160
0
votes
0
replies
1.2k
views
qiime 1 biom format error
R software error sequencing
6.1 years ago by Payal ▴ 160
0
votes
0
replies
3.2k
views
Comment: C: Qiime - problem with biom package in normalization
6.1 years ago by Payal ▴ 160
0
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0
replies
3.6k
views
Comment: C: Htseq Count Error
6.3 years ago by Payal ▴ 160
0
votes
4
replies
3.6k
views
Htseq Count Error
RNA-Seq
updated 6.6 years ago by 105k • written 6.6 years ago by ▴ 160
0
votes
5
replies
2.4k
views
3 prime tag counting RNA Seq
RNA-Seq
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 160
2
votes
2
replies
4.2k
views
How to create EGFP GTF file?
RNA-Seq
updated 6.7 years ago by 148k • written 6.7 years ago by ▴ 160
0
votes
0
replies
2.4k
views
Comment: C: 3 prime tag counting RNA Seq
6.8 years ago by Payal ▴ 160
0
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1
reply
2.4k
views
Comment: C: 3 prime tag counting RNA Seq
6.8 years ago by Payal ▴ 160
0
votes
0
replies
3.5k
views
Answer: A: RNA SEQ ERCC
7.0 years ago by Payal ▴ 160
0
votes
7
replies
3.5k
views
RNA SEQ ERCC
RNA-Seq ERCC tophat bowtie
7.0 years ago by Payal ▴ 160
0
votes
0
replies
3.5k
views
Comment: C: RNA SEQ ERCC
7.1 years ago by Payal ▴ 160
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