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0
votes
1
reply
1.4k
views
Comment:
Comment: What is a command-line program to bootstrap multiple protein sequence alignment?
10 months ago by
mcsimenc
▴ 20
0
votes
1
reply
1.4k
views
Comment:
Comment: What is a command-line program to bootstrap multiple protein sequence alignment?
10 months ago by
mcsimenc
▴ 20
3
votes
5
replies
1.4k
views
seqboot ERROR: sequences out of alignment (SOLVED)
alignment
sequence
protein
bootstrap
phylogenetics
updated 10 months ago by
ATpoint
81k • written 10 months ago by
mcsimenc
▴ 20
0
votes
0
replies
546
views
snpEff problems adding regulatory regions to database
snp
snpEff
gwas
TFBS
20 months ago by
mcsimenc
▴ 20
1
vote
1
reply
458
views
GWAS - need software that outputs effect size and se or variance
GWAS
updated 21 months ago by
Helix
▴ 20 • written 21 months ago by
mcsimenc
▴ 20
0
votes
0
replies
848
views
Comment:
Comment: DESeq2 batch effects with nonuniform design matrix
23 months ago by
mcsimenc
▴ 20
0
votes
1
reply
848
views
Comment:
Comment: DESeq2 batch effects with nonuniform design matrix
23 months ago by
mcsimenc
▴ 20
2
votes
4
replies
848
views
DESeq2 batch effects with nonuniform design matrix
DESeqDataSet
DESeq2
batch
updated 11 months ago by
Ram
43k • written 23 months ago by
mcsimenc
▴ 20
0
votes
1
reply
808
views
Comment:
Comment: DESeq2 use of factors for colData
23 months ago by
mcsimenc
▴ 20
0
votes
3
replies
808
views
DESeq2 use of factors for colData
DESeq2
expression
differential
updated 23 months ago by
swbarnes2
14k • written 23 months ago by
mcsimenc
▴ 20
0
votes
1
reply
2.7k
views
DeepTools plotProfile y axis units?
deeptools
plotprofile
plotheatmap
updated 3.4 years ago by
Devon Ryan
104k • written 3.5 years ago by
mcsimenc
▴ 20
1
vote
1
reply
1.9k
views
cellranger: min gene count and UMI/cell filter?
10x genomics
cellranger
qc
scRNA-seq
updated 3.5 years ago by
swbarnes2
14k • written 3.5 years ago by
mcsimenc
▴ 20
0
votes
1
reply
6.4k
views
Comment:
C: NCBI SRA AWS AMI
3.6 years ago by
mcsimenc
▴ 20
0
votes
0
replies
1.0k
views
Comment:
A: Salmon auxiliary output
3.8 years ago by
mcsimenc
▴ 20
0
votes
1
reply
1.3k
views
Interpreting jmodeltest2 using transposon sequences results
jmodeltest2
transposon
long terminal repeats
model
updated 3.8 years ago by
liangna19911314
• 0 • written 6.9 years ago by
mcsimenc
▴ 20
0
votes
2
replies
899
views
Tool or DB to find candidate transcription factors from promoter sequences? Arabidopsis
transcription factor
promoter
database
updated 4.0 years ago by
Alex Reynolds
35k • written 4.0 years ago by
mcsimenc
▴ 20
0
votes
0
replies
884
views
NCBI's tbl2asn for sequin files for GenBank submissions - what else does the program do in the system?
GenBank
tbl2asn
MacOS
sandboxing
5.1 years ago by
mcsimenc
▴ 20
0
votes
0
replies
4.7k
views
Comment:
A: Assembling PacBio reads using a reference genome
5.3 years ago by
mcsimenc
▴ 20
6
votes
2
replies
2.6k
views
Where can I find GMAP? All links appear dead. Was the project abandoned?
gmap
gsnap
alignment
software availability
updated 2.1 years ago by
GenoMax
141k • written 5.5 years ago by
mcsimenc
▴ 20
0
votes
0
replies
1.6k
views
PASTEC repeat classification software (part of REPET) help needed
repeat classification
repet
pastec
parallel
torque
7.3 years ago by
mcsimenc
▴ 20
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