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2.6k
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Comment: C: Extracting contaminated reads from the sequenced data
6.7 years ago by kspata ▴ 90
0
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0
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1.1k
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Identify RNA and non-AAV vector molecules in a sample
assembly alignment contamination
6.7 years ago by kspata ▴ 90
0
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1
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1.9k
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Comment: C: PhiX forward and reverse reads for MiSeq and NextSeq Platform
6.7 years ago by kspata ▴ 90
1
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3
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1.9k
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PhiX forward and reverse reads for MiSeq and NextSeq Platform
sequencing next-gen Illumina
6.7 years ago by kspata ▴ 90
0
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0
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1.7k
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Comment: C: Missing sequence from a cosmid de novo assembly
6.7 years ago by kspata ▴ 90
0
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1
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1.7k
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Comment: C: Missing sequence from a cosmid de novo assembly
6.7 years ago by kspata ▴ 90
0
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1
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1.5k
views
Comment: C: Error in parsing BAM file using readAlligned
6.8 years ago by kspata ▴ 90
0
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3
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1.5k
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Error in parsing BAM file using readAlligned
R alignment gene
updated 6.8 years ago by 15k • written 6.8 years ago by ▴ 90
0
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1
reply
2.7k
views
Merge Samtools and Freebayes vcf files
alignment exome variants
updated 6.8 years ago by 166k • written 6.8 years ago by ▴ 90
0
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4
replies
1.7k
views
Missing sequence from a cosmid de novo assembly
assembly spades de novo sequencing
updated 6.8 years ago by ★ 5.0k • written 6.8 years ago by ▴ 90
0
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1
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1.7k
views
Comment: C: Obtaining depth for all positions for different exonic ranges from mpileup file
6.8 years ago by kspata ▴ 90
1
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4
replies
1.7k
views
Obtaining depth for all positions for different exonic ranges from mpileup file
next-gen gene resequencing exonic coverage
updated 6.8 years ago by 166k • written 6.8 years ago by ▴ 90
7
votes
2
replies
3.6k
views
Current version of human reference Genome Assembly
genome reference Assembly
updated 6.9 years ago by ★ 3.9k • written 6.9 years ago by ▴ 90
0
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0
replies
882
views
reformat forward and reverse read pairs for variant analysis of exons
assembly variant calling gene exon capture
6.9 years ago by kspata ▴ 90
0
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2
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2.9k
views
Comment: C: de novo assembly of circular plasmid
7.0 years ago by kspata ▴ 90
1
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4
replies
2.9k
views
de novo assembly of circular plasmid
assembly de novo spades plasmids
updated 7.0 years ago by ★ 1.9k • written 7.0 years ago by ▴ 90
1
vote
1
reply
1.1k
views
Strategy to detect deletions in the PE 300 reads
sequencing Assembly SNP Indels
7.0 years ago by kspata ▴ 90
2
votes
5
replies
3.0k
views
Merge multiple overlapping consensus sequences
assembly consensus
updated 7.0 years ago by 45k • written 7.3 years ago by ▴ 90
0
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0
replies
1.6k
views
Comment: C: Deletions in a consensus sequence.
7.0 years ago by kspata ▴ 90
0
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2
replies
1.6k
views
Deletions in a consensus sequence.
alignment sequencing Deletions Consnesus Sequence
7.0 years ago by kspata ▴ 90
0
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0
replies
1000
views
Deletion detected at less frequency than expected for a plasmid sample
alignment assembly
updated 7.0 years ago by 45k • written 7.0 years ago by ▴ 90
0
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0
replies
2.1k
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Comment: C: download genbank sequences with exon sequences highlighted
7.1 years ago by kspata ▴ 90
2
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3
replies
1.8k
views
Variant Allele Frequency
snp vcf samtools
updated 7.1 years ago by ▴ 300 • written 7.1 years ago by ▴ 90
1
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5
replies
2.1k
views
download genbank sequences with exon sequences highlighted
gene Genbank
updated 7.1 years ago by ▴ 390 • written 7.1 years ago by ▴ 90
0
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0
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1.8k
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Comment: C: Variant Allele Frequency
7.1 years ago by kspata ▴ 90
0
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2
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1.7k
views
Comment: C: Low coverage for bases near the end of target reference sequence
7.1 years ago by kspata ▴ 90
0
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1
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1.7k
views
Comment: C: Low coverage for bases near the end of target reference sequence
7.1 years ago by kspata ▴ 90
0
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7
replies
1.7k
views
Low coverage for bases near the end of target reference sequence
alignment bowtie2 sequencing
7.1 years ago by kspata ▴ 90
0
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0
replies
1.9k
views
Answer: A: Catalogue of conserved CTCF ChIP-seq peaks/binding sites across mouse tissues?
7.2 years ago by kspata ▴ 90
3
votes
1
reply
1.4k
views
Base by base alignment from BLAST to reference
Blast alignment
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 90
0
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1
reply
2.5k
views
Comment: C: How to find rs numbers from Coriell ID
7.2 years ago by kspata ▴ 90
1
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4
replies
2.5k
views
How to find rs numbers from Coriell ID
dbSNP 1000Genomes Coriell ID rs numbers
7.2 years ago by kspata ▴ 90
0
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1
reply
3.6k
views
Comment: C: How to know if a variant is sequencing or mapping artifact?
updated 7.2 years ago by 16k • written 7.2 years ago by ▴ 90
6
votes
4
replies
3.6k
views
How to know if a variant is sequencing or mapping artifact?
Variant freebayes vcf
updated 7.2 years ago by 16k • written 7.3 years ago by ▴ 90
0
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0
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3.1k
views
Comment: C: Generate Consensus Sequence from Pairwise Alignment
7.3 years ago by kspata ▴ 90
0
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2
replies
3.1k
views
Generate Consensus Sequence from Pairwise Alignment
alignment Consensus Blast
7.3 years ago by kspata ▴ 90
0
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1
reply
3.0k
views
Comment: C: Merge multiple overlapping consensus sequences
7.3 years ago by kspata ▴ 90
1
vote
1
reply
2.5k
views
Find variants supported by at least 20 reads freebayes
Freebayes Variant Calling
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 90
0
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1
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1.7k
views
Comment: C: Mpileup generation using Bisulfite converted reference
7.3 years ago by kspata ▴ 90
0
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3
replies
1.7k
views
Mpileup generation using Bisulfite converted reference
mpileup faidx samtools bismark bisulfite
7.3 years ago by kspata ▴ 90
0
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0
replies
1.3k
views
Methylation Status of CpG islands for a specific gene
gene R BS methylKit Bismark
7.3 years ago by kspata ▴ 90
9
votes
13
replies
8.7k
views
Calculate Mapping Rate for an alignment to each sequence of a multi-fasta reference
RNA-Seq SAMtools flagstat bowtie2 Mapping Rate
updated 7.4 years ago by 35k • written 7.4 years ago by ▴ 90
0
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0
replies
8.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
7.4 years ago by kspata ▴ 90
0
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1
reply
8.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
7.4 years ago by kspata ▴ 90
0
votes
0
replies
8.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
7.4 years ago by kspata ▴ 90
0
votes
1
reply
8.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
7.4 years ago by kspata ▴ 90
0
votes
2
replies
8.7k
views
Comment: C: Calculate Mapping Rate for an alignment to each sequence of a multi-fasta refere
7.4 years ago by kspata ▴ 90
0
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0
replies
3.6k
views
Comment: C: Convert blastn to gff3
8.4 years ago by kspata ▴ 90
3
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3
replies
3.6k
views
Convert blastn to gff3
blastp gff3 blastn gff3
8.4 years ago by kspata ▴ 90
0
votes
0
replies
1.7k
views
Comment: C: CRISPR repeat identification tool comparison
8.5 years ago by kspata ▴ 90
105 results • Page 2 of 3
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