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Get Cluster PF % and Cluster Density from Interop module using python
Interop python
22 months ago by kspata ▴ 90
0
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0
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1.2k
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Answer: Answer: Get Cluster PF % and Cluster Density from Interop module using python
22 months ago by kspata ▴ 90
0
votes
0
replies
994
views
bed2vcf (bedr) package error
R vcf bedr bed
updated 4.1 years ago by 166k • written 4.1 years ago by ▴ 90
0
votes
1
reply
795
views
Convert coordinates from one cotton genome to another
Genome over cotton lift
updated 4.1 years ago by 16k • written 4.1 years ago by ▴ 90
1
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3
replies
1.7k
views
differences between Illumina Platinum Variant Calls and NIST variant calls
SNP vcf
updated 4.1 years ago by • 0 • written 6.3 years ago by ▴ 90
3
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7
replies
2.4k
views
7 follow
Annotation of non model fish (mahi mahi) genome
Assembly Annotation
updated 4.6 years ago by 9.3k • written 5.3 years ago by ▴ 90
0
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0
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719
views
Total number of trimmed reads less than number of mapped reads
alignment next-gen sequence SAMtools BWA
4.7 years ago by kspata ▴ 90
0
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1
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1.5k
views
Comment: C: Extract unique barcodes and find their frequency
5.1 years ago by kspata ▴ 90
0
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3
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1.5k
views
Extract unique barcodes and find their frequency
ngs illumina mapping
5.1 years ago by kspata ▴ 90
0
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0
replies
1.2k
views
Comment: C: Read showing Insertion of 41 bases when aligned with BWA
5.3 years ago by kspata ▴ 90
0
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2
replies
1.2k
views
Comment: C: Read showing Insertion of 41 bases when aligned with BWA
5.3 years ago by kspata ▴ 90
0
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5
replies
1.2k
views
Read showing Insertion of 41 bases when aligned with BWA
Variant BWA Bowtie2
updated 5.3 years ago by 15k • written 5.3 years ago by ▴ 90
0
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0
replies
937
views
Detect Transgene Insertion Site using SAM format
Transgene Insertion Site BWA SAM tools
5.7 years ago by kspata ▴ 90
0
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0
replies
958
views
Comparative analysis of experimental and control data from BS seq run
BS seq CpG Annoattion Bismark
5.8 years ago by kspata ▴ 90
0
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0
replies
1.2k
views
Calculate LOH score for tumor only sample using GenomeStudio
GenomeStudio Infinium Assay Genotyping LOH score
5.9 years ago by kspata ▴ 90
0
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10
replies
12k
views
sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
perl bash bwa
updated 6.1 years ago by 22k • written 6.2 years ago by ▴ 90
0
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1
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12k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
6.2 years ago by kspata ▴ 90
0
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1
reply
12k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
6.2 years ago by kspata ▴ 90
0
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1
reply
12k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
6.2 years ago by kspata ▴ 90
0
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1
reply
12k
views
Comment: C: sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
6.2 years ago by kspata ▴ 90
0
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0
replies
1.7k
views
Comment: C: differences between Illumina Platinum Variant Calls and NIST variant calls
6.3 years ago by kspata ▴ 90
0
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0
replies
1.9k
views
Comment: C: Validation of SNP and INDEL calling pipeline
6.4 years ago by kspata ▴ 90
0
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2
replies
1.9k
views
Validation of SNP and INDEL calling pipeline
genome alignment SNP INDEL
updated 6.4 years ago by 48k • written 6.4 years ago by ▴ 90
1
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3
replies
2.5k
views
Find the genomic position of CTCF binding site on DMPK gene
gene genome UCSC Genome Browser
updated 6.5 years ago by 20 • written 7.4 years ago by ▴ 90
1
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0
replies
1.3k
views
Variant discrepancy between technical replicates
freebayes alignment
updated 6.5 years ago by 12k • written 6.5 years ago by ▴ 90
0
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0
replies
1.1k
views
Error running samjdk.jar for extracting reads containing indels
alignment jvarkit samjdk indels
6.6 years ago by kspata ▴ 90
0
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0
replies
3.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
6.6 years ago by kspata ▴ 90
0
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0
replies
3.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
6.6 years ago by kspata ▴ 90
7
votes
10
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3.7k
views
Effect of trimming on alignment and fastqc report.
alignment next gen Fastqc trim galore
updated 6.6 years ago by 9.0k • written 6.6 years ago by ▴ 90
0
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0
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3.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
6.6 years ago by kspata ▴ 90
0
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1
reply
3.7k
views
Comment: C: Effect of trimming on alignment and fastqc report.
6.6 years ago by kspata ▴ 90
0
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0
replies
1.6k
views
Comment: C: Partially map reads to a reference genome
6.7 years ago by kspata ▴ 90
0
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1
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1.6k
views
Comment: C: Partially map reads to a reference genome
6.7 years ago by kspata ▴ 90
0
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1
reply
1.6k
views
Comment: C: Partially map reads to a reference genome
6.7 years ago by kspata ▴ 90
0
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7
replies
1.6k
views
Partially map reads to a reference genome
alignment sequencing binning
6.7 years ago by kspata ▴ 90
0
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0
replies
2.0k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
6.7 years ago by kspata ▴ 90
0
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2
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2.0k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
6.7 years ago by kspata ▴ 90
0
votes
1
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2.0k
views
Comment: C: Obtain sequence of a gene with vector DNA integrated
6.7 years ago by kspata ▴ 90
2
votes
7
replies
2.0k
views
Obtain sequence of a gene with vector DNA integrated
assembly gene next-gen alignment
updated 6.7 years ago by ★ 2.6k • written 6.7 years ago by ▴ 90
0
votes
2
replies
1.6k
views
Coverage Discrepancy for samtools mpileup
sequencing alignment Plasmid
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 90
0
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3
replies
2.2k
views
Comment: C: Identification and taxonomic classification of Nematode
6.7 years ago by kspata ▴ 90
0
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1
reply
2.2k
views
Comment: C: Identification and taxonomic classification of Nematode
6.7 years ago by kspata ▴ 90
0
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1
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2.2k
views
Comment: C: Identification and taxonomic classification of Nematode
6.7 years ago by kspata ▴ 90
0
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10
replies
2.2k
views
Identification and taxonomic classification of Nematode
next-gen PCR products Nematode 18S
6.7 years ago by kspata ▴ 90
1
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1
reply
1.7k
views
Low % Phred Q30 for one of the lanes in HiSeq 4000 SE50 run
sequencing ChIP-Seq Barcode
updated 6.7 years ago by 154k • written 6.7 years ago by ▴ 90
0
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0
replies
2.0k
views
Comment: C: Set minimum variant frequency while calling variants with samtools
6.8 years ago by kspata ▴ 90
0
votes
2
replies
2.0k
views
Set minimum variant frequency while calling variants with samtools
samtools resequencing alignment variant frequency
updated 6.8 years ago by 103k • written 6.8 years ago by ▴ 90
1
vote
1
reply
2.8k
views
Remove low quality base calls from reads
Trimming Trim_Galore Alignment Variant Calls
updated 6.8 years ago by ★ 1.4k • written 6.8 years ago by ▴ 90
0
votes
0
replies
1.6k
views
Comment: C: Coverage Discrepancy for samtools mpileup
6.8 years ago by kspata ▴ 90
3
votes
2
replies
1.6k
views
Audit trail for Bioinformatics software tools
next-gen align samtools alignment
updated 6.8 years ago by 20 • written 6.8 years ago by ▴ 90
105 results • Page 1 of 3
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