Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
4.0k
views
Comment: Comment: DiffBind reports no significant differentially enriched peaks
2.2 years ago by chiefcat ▴ 180
0
votes
1
reply
4.0k
views
Comment: Comment: DiffBind reports no significant differentially enriched peaks
2.4 years ago by chiefcat ▴ 180
2
votes
2
replies
1.4k
views
How to obtain low mappability regions from UCSC for deepTools computeGCBias?
deepTools
updated 2.5 years ago by 154k • written 2.5 years ago by ▴ 180
47
votes
4
replies
33k
views
ChIP-seq analysis: Tutorial for Beginners
ChIP-Seq Dummy
updated 4.9 years ago by 89k • written 8.1 years ago by ▴ 180
0
votes
0
replies
9.6k
views
Comment: C: Doubts related to MACS tool
updated 5.9 years ago by 45k • written 7.8 years ago by ▴ 180
5
votes
7
replies
3.9k
views
[ChIP-seq. signal plot] How to align the based line of different samples?
deepTools ChIP-seq normalization
updated 6.1 years ago by ▴ 40 • written 7.8 years ago by ▴ 180
0
votes
2
replies
3.0k
views
Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)
RNA-Seq DEG database cancer microarray
updated 6.8 years ago by ★ 3.0k • written 6.8 years ago by ▴ 180
0
votes
0
replies
2.1k
views
Homer [findMotifsGenome.pl] result interputation.
ChIP-Seq Homer motif
7.6 years ago by chiefcat ▴ 180
0
votes
0
replies
1.4k
views
Infer protein function by Gene ontology (ChIP-seq. dataset)
ChIP-Seq Gene ontology
7.7 years ago by chiefcat ▴ 180
0
votes
0
replies
3.0k
views
Comment: C: ChIP-Seq identification of peaks
7.8 years ago by chiefcat ▴ 180
0
votes
1
reply
2.0k
views
Are there any tools which can plot biclustered heatmap on ChIP-seq. signal?
ChIP-Seq heatmap clustering
7.8 years ago by chiefcat ▴ 180
0
votes
1
reply
4.4k
views
Comment: C: [ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal
7.8 years ago by chiefcat ▴ 180
0
votes
1
reply
3.9k
views
Comment: C: [ChIP-seq. signal plot] How to align the based line of different samples?
7.8 years ago by chiefcat ▴ 180
2
votes
3
replies
4.4k
views
[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deepTools ChIP-Seq biological replicates
updated 7.8 years ago by 105k • written 7.8 years ago by ▴ 180
1
vote
1
reply
5.6k
views
Input control for ChIP-seq. [Seeking for the clarification between "Library DNA conc.", "no. of raw reads", and "normalization"]
ChIP-Seq normalization sample preperation
updated 7.9 years ago by 9.0k • written 7.9 years ago by ▴ 180
1
vote
2
replies
4.6k
views
[ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in gene A & defined TSS region of gene B)
ChIPseeker annotation ChIP-Seq
updated 8.0 years ago by ★ 2.6k • written 8.0 years ago by ▴ 180
0
votes
1
reply
6.1k
views
Comment: C: Sorting heatmaps by gene expression
8.1 years ago by chiefcat ▴ 180
0
votes
1
reply
6.1k
views
Comment: C: Sorting heatmaps by gene expression
8.1 years ago by chiefcat ▴ 180
0
votes
1
reply
6.1k
views
Comment: C: Sorting heatmaps by gene expression
8.1 years ago by chiefcat ▴ 180
0
votes
1
reply
6.1k
views
Comment: C: Sorting heatmaps by gene expression
8.1 years ago by chiefcat ▴ 180
8
votes
4
replies
4.7k
views
[How to Save plots in R] DiffBind
ChIP-Seq R DiffBind
updated 8.1 years ago by ★ 2.2k • written 8.1 years ago by ▴ 180
0
votes
0
replies
2.2k
views
Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
8.1 years ago by chiefcat ▴ 180
0
votes
0
replies
2.2k
views
Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
8.1 years ago by chiefcat ▴ 180
4
votes
4
replies
2.2k
views
Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
ChIP-Seq
updated 8.1 years ago by 9.0k • written 8.1 years ago by ▴ 180
7
votes
3
replies
2.2k
views
Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
NGS RNA-Seq ChIP-Seq
updated 2.5 years ago by 45k • written 8.1 years ago by ▴ 180
1
vote
2
replies
1.9k
views
Gene annotation from genomic features
ChIP-Seq RNA-Seq Annotation
8.1 years ago by chiefcat ▴ 180
3
votes
1
reply
2.0k
views
[Graph plotting] Correlation between gene expression & histone marks (Anyone know how to plot one/ the one like this figure?)
RNA-Seq ChIP-Seq
updated 8.1 years ago by 27k • written 8.1 years ago by ▴ 180
0
votes
0
replies
33k
views
Comment: C: ChIP-seq. analysis Tutorial for Dummies
8.1 years ago by chiefcat ▴ 180
0
votes
1
reply
2.9k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
8.1 years ago by chiefcat ▴ 180
0
votes
1
reply
2.9k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
8.1 years ago by chiefcat ▴ 180
0
votes
0
replies
2.9k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
8.1 years ago by chiefcat ▴ 180
0
votes
0
replies
2.9k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
8.1 years ago by chiefcat ▴ 180
1
vote
8
replies
2.9k
views
Tools for investigating the correlation of differential gene expression & histone marks/ TF binding?
RNA-Seq ChIP-Seq Integration
updated 8.1 years ago by ▴ 110 • written 8.1 years ago by ▴ 180
1
vote
2
replies
7.0k
views
Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
ChIP-Seq Homer Motif
updated 2.3 years ago by ▴ 10 • written 8.2 years ago by ▴ 180
0
votes
1
reply
6.0k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
8.2 years ago by chiefcat ▴ 180
1
vote
9
replies
6.0k
views
ChIP-seq differential peak calling (Any way to set the window size for calling differential enriched peaks?)
ChIP-Seq Differential peak calling MACS2 bdgdiff
8.2 years ago by chiefcat ▴ 180
0
votes
1
reply
6.0k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
8.2 years ago by chiefcat ▴ 180
0
votes
1
reply
6.0k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
8.2 years ago by chiefcat ▴ 180
0
votes
1
reply
5.0k
views
Appropriate peak length of ChIP-seq. (Histone modification having different pattern at gene body & promoter & intergenic regions)
ChIP-Seq Peak length Histone modification
updated 8.2 years ago by 12k • written 8.2 years ago by ▴ 180
39 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6