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Comment: Comment: DiffBind reports no significant differentially enriched peaks
8 months ago by chiefcat ▴ 180
0
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1
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2.0k
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Comment: Comment: DiffBind reports no significant differentially enriched peaks
10 months ago by chiefcat ▴ 180
2
votes
2
replies
802
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How to obtain low mappability regions from UCSC for deepTools computeGCBias?
deepTools
updated 11 months ago by 141k • written 11 months ago by ▴ 180
46
votes
4
replies
30k
views
ChIP-seq analysis: Tutorial for Beginners
ChIP-Seq Dummy
updated 3.4 years ago by 81k • written 6.6 years ago by ▴ 180
0
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0
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7.6k
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Comment: C: Doubts related to MACS tool
updated 4.4 years ago by 43k • written 6.3 years ago by ▴ 180
5
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7
replies
2.9k
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[ChIP-seq. signal plot] How to align the based line of different samples?
deepTools ChIP-seq normalization
updated 4.6 years ago by ▴ 40 • written 6.3 years ago by ▴ 180
0
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2
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2.5k
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Any database for downloading cancer cell-lines transcriptome differential expressed gene (DEG) list? (Normal vs cancer cell-lines)
RNA-Seq DEG database cancer microarray
updated 5.3 years ago by ★ 3.0k • written 5.3 years ago by ▴ 180
0
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0
replies
1.7k
views
Homer [findMotifsGenome.pl] result interputation.
ChIP-Seq Homer motif
6.1 years ago by chiefcat ▴ 180
0
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0
replies
1.1k
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Infer protein function by Gene ontology (ChIP-seq. dataset)
ChIP-Seq Gene ontology
6.1 years ago by chiefcat ▴ 180
0
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0
replies
2.3k
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Comment: C: ChIP-Seq identification of peaks
6.3 years ago by chiefcat ▴ 180
0
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1
reply
1.7k
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Are there any tools which can plot biclustered heatmap on ChIP-seq. signal?
ChIP-Seq heatmap clustering
6.3 years ago by chiefcat ▴ 180
0
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1
reply
3.5k
views
Comment: C: [ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal
6.3 years ago by chiefcat ▴ 180
0
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1
reply
2.9k
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Comment: C: [ChIP-seq. signal plot] How to align the based line of different samples?
6.3 years ago by chiefcat ▴ 180
2
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3
replies
3.5k
views
[ChIP-seq. signal plot] How to merge ChIP-seq. biological replicates for signal profile plotting?
deepTools ChIP-Seq biological replicates
updated 6.3 years ago by 104k • written 6.3 years ago by ▴ 180
1
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1
reply
4.8k
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Input control for ChIP-seq. [Seeking for the clarification between "Library DNA conc.", "no. of raw reads", and "normalization"]
ChIP-Seq normalization sample preperation
updated 6.3 years ago by 8.7k • written 6.3 years ago by ▴ 180
1
vote
2
replies
3.8k
views
[ChIPSeeker] Getting overlapping genomic feature annotation (e.g. peak locate in gene A & defined TSS region of gene B)
ChIPseeker annotation ChIP-Seq
updated 6.5 years ago by ★ 2.6k • written 6.5 years ago by ▴ 180
0
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1
reply
4.8k
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Comment: C: Sorting heatmaps by gene expression
6.5 years ago by chiefcat ▴ 180
0
votes
1
reply
4.8k
views
Comment: C: Sorting heatmaps by gene expression
6.5 years ago by chiefcat ▴ 180
0
votes
1
reply
4.8k
views
Comment: C: Sorting heatmaps by gene expression
6.5 years ago by chiefcat ▴ 180
0
votes
1
reply
4.8k
views
Comment: C: Sorting heatmaps by gene expression
6.5 years ago by chiefcat ▴ 180
8
votes
4
replies
3.9k
views
[How to Save plots in R] DiffBind
ChIP-Seq R DiffBind
updated 6.6 years ago by ★ 2.0k • written 6.6 years ago by ▴ 180
0
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0
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1.6k
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Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
6.6 years ago by chiefcat ▴ 180
0
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0
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1.6k
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Comment: C: Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
6.6 years ago by chiefcat ▴ 180
4
votes
4
replies
1.6k
views
Signal desert in ChIP-seq. data? (no signal/ noise in some regions)
ChIP-Seq
updated 6.6 years ago by 8.7k • written 6.6 years ago by ▴ 180
7
votes
3
replies
1.7k
views
Forum: [Please share] How do you keep your NGS data analysis methods/ strategies up to date? (e.g. Data sub-groupping, datasets overlapping, etc.)
NGS RNA-Seq ChIP-Seq
updated 11 months ago by 43k • written 6.6 years ago by ▴ 180
1
vote
2
replies
1.6k
views
Gene annotation from genomic features
ChIP-Seq RNA-Seq Annotation
6.6 years ago by chiefcat ▴ 180
3
votes
1
reply
1.7k
views
[Graph plotting] Correlation between gene expression & histone marks (Anyone know how to plot one/ the one like this figure?)
RNA-Seq ChIP-Seq
updated 6.6 years ago by 27k • written 6.6 years ago by ▴ 180
0
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0
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30k
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Comment: C: ChIP-seq. analysis Tutorial for Dummies
6.6 years ago by chiefcat ▴ 180
0
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1
reply
2.1k
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Comment: C: Tools for investigating the correlation of differential gene expression & histon
6.6 years ago by chiefcat ▴ 180
0
votes
1
reply
2.1k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
6.6 years ago by chiefcat ▴ 180
0
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0
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2.1k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
6.6 years ago by chiefcat ▴ 180
0
votes
0
replies
2.1k
views
Comment: C: Tools for investigating the correlation of differential gene expression & histon
6.6 years ago by chiefcat ▴ 180
1
vote
8
replies
2.1k
views
Tools for investigating the correlation of differential gene expression & histone marks/ TF binding?
RNA-Seq ChIP-Seq Integration
updated 6.6 years ago by ▴ 110 • written 6.6 years ago by ▴ 180
1
vote
2
replies
5.4k
views
Homer motif analysis: "Very close % of target vs % of Background sequences with Motif" & "SeqBias at 1st rank"
ChIP-Seq Homer Motif
updated 9 months ago by ▴ 10 • written 6.6 years ago by ▴ 180
0
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1
reply
4.9k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
6.7 years ago by chiefcat ▴ 180
1
vote
9
replies
4.9k
views
ChIP-seq differential peak calling (Any way to set the window size for calling differential enriched peaks?)
ChIP-Seq Differential peak calling MACS2 bdgdiff
6.7 years ago by chiefcat ▴ 180
0
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1
reply
4.9k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
6.7 years ago by chiefcat ▴ 180
0
votes
1
reply
4.9k
views
Comment: C: ChIP-seq differential peak calling (Any way to set the window size for calling d
6.7 years ago by chiefcat ▴ 180
0
votes
1
reply
4.5k
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Appropriate peak length of ChIP-seq. (Histone modification having different pattern at gene body & promoter & intergenic regions)
ChIP-Seq Peak length Histone modification
updated 6.7 years ago by 12k • written 6.7 years ago by ▴ 180
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