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1
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6
replies
6.5k
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Convert fastq to plink .bed
plink fastq bam bed
updated 2.4 years ago by ▴ 20 • written 7.2 years ago by ▴ 90
3
votes
1
reply
1.5k
views
Tool for extracting copy number alterations from a .maf mutation file
cna maf
updated 3.9 years ago by 88k • written 3.9 years ago by ▴ 90
5
votes
2
replies
881
views
NCBI expect value
ncbi expect value
5.6 years ago by genomics Newbie ▴ 90
1
vote
1
reply
923
views
NCBI BLAST - downloads to only include taxa (no alignments)
blast
5.6 years ago by genomics Newbie ▴ 90
1
vote
0
replies
923
views
Answer: A: NCBI BLAST - downloads to only include taxa (no alignments)
5.6 years ago by genomics Newbie ▴ 90
4
votes
4
replies
1.3k
views
Microbiome Taxonomy composition
microbiome taxonomy
updated 5.7 years ago by ★ 3.3k • written 5.7 years ago by ▴ 90
4
votes
3
replies
3.6k
views
RNA-Seq QC for aligned files (bam)
RNA-Seq bam qc
updated 5.9 years ago by 9.0k • written 5.9 years ago by ▴ 90
2
votes
1
reply
1.6k
views
Ensembl Data Slicer
ensembl Data Slicer 1000 genomes Populations
updated 6.2 years ago by 24k • written 6.2 years ago by ▴ 90
5
votes
7
replies
1.5k
views
Using Bioconductor package for gene expression analysis
gene expression RNA-Seq
updated 6.3 years ago by 8.3k • written 6.3 years ago by ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Using Bioconductor package for gene expression analysis
6.3 years ago by genomics Newbie ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Using Bioconductor package for gene expression analysis
6.3 years ago by genomics Newbie ▴ 90
2
votes
2
replies
5.7k
views
vcf filter of lowQual
vcf filter
updated 6.5 years ago by 88k • written 6.5 years ago by ▴ 90
1
vote
0
replies
2.2k
views
plink .bim file missing variant ID
plink .bim SNP
6.5 years ago by genomics Newbie ▴ 90
5
votes
5
replies
2.5k
views
bam to vcf to .bed
bed bam vcf
updated 6.5 years ago by 16k • written 6.5 years ago by ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Merging individual .bed files?
6.5 years ago by genomics Newbie ▴ 90
1
vote
3
replies
2.0k
views
Merging individual .bed files?
bed bam samtools bamtobed
updated 22 months ago by 44k • written 6.5 years ago by ▴ 90
4
votes
3
replies
2.9k
views
bam file merge
bam merge
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Viewers for examining haplotypes
6.6 years ago by genomics Newbie ▴ 90
1
vote
3
replies
2.0k
views
Viewers for examining haplotypes
haplotype chromosomes
6.6 years ago by genomics Newbie ▴ 90
1
vote
1
reply
2.3k
views
Variant Control Format (VCF) TO Mutation Annotation Format (.MAF)
vcf maf
updated 6.7 years ago by ▴ 530 • written 6.7 years ago by ▴ 90
0
votes
0
replies
4.6k
views
Comment: C: Finding adapters in sequences
6.8 years ago by genomics Newbie ▴ 90
1
vote
5
replies
4.6k
views
Finding adapters in sequences
16S adapter
updated 6.8 years ago by 148k • written 6.8 years ago by ▴ 90
0
votes
0
replies
4.6k
views
Comment: C: Finding adapters in sequences
6.8 years ago by genomics Newbie ▴ 90
0
votes
0
replies
3.7k
views
Comment: C: [bwa sai2sam_pe] fail to locate the index
6.9 years ago by genomics Newbie ▴ 90
0
votes
2
replies
3.7k
views
[bwa sai2sam_pe] fail to locate the index
BWA index
6.9 years ago by genomics Newbie ▴ 90
0
votes
1
reply
19k
views
Comment: C: Creating a BWA index with an index_prefix
6.9 years ago by genomics Newbie ▴ 90
0
votes
1
reply
19k
views
Comment: C: Creating a BWA index with an index_prefix
6.9 years ago by genomics Newbie ▴ 90
3
votes
5
replies
19k
views
Creating a BWA index with an index_prefix
bwa index
updated 6.9 years ago by 148k • written 6.9 years ago by ▴ 90
0
votes
1
reply
5.2k
views
Comment: C: Is there a tool to draw local ancestry plots per chromosome?
7.0 years ago by genomics Newbie ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: Tools that represent standard output from local ancestry estimation software vis
7.0 years ago by genomics Newbie ▴ 90
0
votes
0
replies
5.2k
views
Comment: Comment: Is there a tool to draw local ancestry plots per chromosome?
7.0 years ago by genomics Newbie ▴ 90
0
votes
1
reply
6.2k
views
Comment: C: hg19 exome reference and index
7.0 years ago by genomics Newbie ▴ 90
4
votes
3
replies
6.2k
views
hg19 exome reference and index
hg19 exome reference index
updated 7.0 years ago by 88k • written 7.0 years ago by ▴ 90
2
votes
3
replies
1.6k
views
Picard Installation problem - older version
Picard
updated 7.0 years ago by 165k • written 7.0 years ago by ▴ 90
2
votes
1
reply
2.3k
views
Format of SNP RS# in plink formatted .map
ped SNP
updated 22 months ago by 44k • written 7.0 years ago by ▴ 90
0
votes
1
reply
6.5k
views
Comment: C: Convert fastq to plink .bed
7.2 years ago by genomics Newbie ▴ 90
0
votes
0
replies
6.5k
views
Comment: C: Convert fastq to plink .bed
7.2 years ago by genomics Newbie ▴ 90
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