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Showing :
questions
4
votes
3
replies
705
views
How to edit the fasta headers in a multiline fasta file?
gene
genome
protein
updated 22 months ago by
cpad0112
21k • written 22 months ago by
pinn
▴ 210
9
votes
5
replies
2.2k
views
How to bechmark a human dataset ? (is it needed)
genome
next-gen
updated 2.4 years ago by
Jeremy Leipzig
22k • written 6.2 years ago by
pinn
▴ 210
11
votes
11
replies
7.8k
views
7 follow
snpEFF not able to download GRCH38 ?
genome
Annotation
2.5 years ago by
pinn
▴ 210
3
votes
5
replies
2.1k
views
Does Last aligner only outputs the mapped reads to a bam file ?
assembly
alignment
sequencing
next-gen
genome
updated 2.8 years ago by
changhaiduan
• 0 • written 5.8 years ago by
pinn
▴ 210
2
votes
3
replies
1.3k
views
How to extract only the specific fasta sequences by matching the ID's to a different source files ?
RNA
alignment
DNA
updated 3.1 years ago by
Prakash
★ 2.2k • written 3.1 years ago by
pinn
▴ 210
4
votes
7
replies
4.5k
views
What is Left align and parsimonious (VCF normalisation) ?
genome
SNP
next-gen
sequence
updated 4.1 years ago by
bjwiley23
▴ 20 • written 6.3 years ago by
pinn
▴ 210
1
vote
4
replies
1.9k
views
How to convert soap2 output to sam ?
Assembly
genome
updated 4.8 years ago by
john.major
• 0 • written 5.9 years ago by
pinn
▴ 210
0
votes
13
replies
2.2k
views
Other then picard better way to calculate insertmetrics from a bam file ?
alignment
next-gen
assembly
genome
updated 5.6 years ago by
trausch
★ 1.9k • written 5.6 years ago by
pinn
▴ 210
2
votes
5
replies
1.6k
views
Properly paired sequences ?
genome
assembly
sequence
alignment
updated 5.6 years ago by
h.mon
35k • written 5.6 years ago by
pinn
▴ 210
5
votes
8
replies
2.9k
views
Samtools, not sorting a bam file correctly ?
Assembly
genome
next-gen
updated 5.8 years ago by
Ram
43k • written 5.8 years ago by
pinn
▴ 210
3
votes
8
replies
3.3k
views
Comparing alignment stats BWAmem vs. Soap2 aligner
genome
next-gen
alignment
updated 5.8 years ago by
Ram
43k • written 5.8 years ago by
pinn
▴ 210
3
votes
5
replies
2.1k
views
gSNAP aligner generating truncated sam file ?
Assembly
genome
next-gen
alignment
updated 5.9 years ago by
h.mon
35k • written 5.9 years ago by
pinn
▴ 210
0
votes
3
replies
1.8k
views
Luigi Error NGS pipeline ?
next-gen
sequence
updated 6.0 years ago by
Devon Ryan
104k • written 6.2 years ago by
pinn
▴ 210
8
votes
6
replies
2.3k
views
Gold standard datasets
genome
updated 6.1 years ago by
d-cameron
★ 2.9k • written 6.1 years ago by
pinn
▴ 210
2
votes
6
replies
1.5k
views
SMaSH installation error
software error
sequencing
alignment
SNP
updated 6.2 years ago by
Biostar
20 • written 6.3 years ago by
pinn
▴ 210
7
votes
3
replies
6.9k
views
Biallelic and Multiallelic explain
genome
updated 6.3 years ago by
arta
▴ 670 • written 6.3 years ago by
pinn
▴ 210
3
votes
3
replies
1.2k
views
MOSAIK Aligner how much min memory it requires ?
alignment
6.3 years ago by
pinn
▴ 210
2
votes
5
replies
2.2k
views
BAN - Best alignment normalisation error
software error
snp nextgen alignment
updated 6.3 years ago by
Biostar
20 • written 6.3 years ago by
pinn
▴ 210
6
votes
4
replies
4.4k
views
How to convert a raw vcf to a phased vcf
alignment
SNP nextgen
updated 6.3 years ago by
Pierre Lindenbaum
161k • written 6.3 years ago by
pinn
▴ 210
1
vote
3
replies
2.8k
views
How to find (count) location/type of variant from a VCF file ?
SNP
6.3 years ago by
pinn
▴ 210
1
vote
9
replies
5.5k
views
GATK Unified Genotyper
alignment
updated 6.3 years ago by
Raony GuimarĂ£es
★ 1.4k • written 6.3 years ago by
pinn
▴ 210
21 results • Page
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