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0
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0
replies
69
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Imputation advice
imputation
3 days ago by kl ▴ 10
0
votes
0
replies
141
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Heterozygous haploid calls
plink genetics
3 months ago by kl ▴ 10
0
votes
0
replies
343
views
Comment: Comment: How to perform quality control for sex when there are no variants after threshol
4 months ago by kl ▴ 10
0
votes
2
replies
343
views
How to perform quality control for sex when there are no variants after thresholding for MAF
sex-check
updated 4 months ago by 43k • written 4 months ago by ▴ 10
0
votes
1
reply
569
views
Comment: Comment: Genetic data QC prior to imputation
4 months ago by kl ▴ 10
0
votes
1
reply
369
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Issue with genetic QC sex check
plink
4 months ago by kl ▴ 10
0
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0
replies
369
views
Comment: Comment: Issue with genetic QC sex check
4 months ago by kl ▴ 10
0
votes
0
replies
270
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Negative F statistics for sex check in plink
plink check sex
5 months ago by kl ▴ 10
1
vote
3
replies
569
views
Genetic data QC prior to imputation
imputation
updated 4 months ago by ★ 1.4k • written 5 months ago by ▴ 10
0
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0
replies
810
views
Comment: Comment: SNP IDs
5 months ago by kl ▴ 10
0
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1
reply
810
views
Comment: Comment: SNP IDs
5 months ago by kl ▴ 10
0
votes
1
reply
810
views
Comment: Comment: SNP IDs
5 months ago by kl ▴ 10
4
votes
7
replies
810
views
SNP IDs
SNP
5 months ago by kl ▴ 10
0
votes
1
reply
637
views
Comment: Comment: QC of genetic data
6 months ago by kl ▴ 10
0
votes
3
replies
637
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QC of genetic data
PLINK
updated 6 months ago by ★ 2.3k • written 6 months ago by ▴ 10
0
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1
reply
914
views
Repeated measures in GWAS and polygenic risk scores analyses
SNP
updated 5 months ago by 11k • written 4.1 years ago by ▴ 10
0
votes
1
reply
2.5k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
3.6 years ago by kl ▴ 10
1
vote
1
reply
1.1k
views
How to incorporate interaction between two alleles in ApoE for Alzheimer's polygenic risk score?
SNP
updated 3.6 years ago by 20 • written 5.4 years ago by ▴ 10
0
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1
reply
2.5k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
3.6 years ago by kl ▴ 10
0
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1
reply
2.5k
views
Comment: Comment: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
updated 5 months ago by 11k • written 3.6 years ago by ▴ 10
0
votes
7
replies
2.5k
views
How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
gene genome
updated 5 months ago by 11k • written 3.7 years ago by ▴ 10
0
votes
0
replies
823
views
Match:0 michigan imputation server output
michigan imputation server
updated 3.7 years ago by 5.3k • written 3.7 years ago by ▴ 10
0
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1
reply
1.2k
views
Comment: C: How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools
3.7 years ago by kl ▴ 10
1
vote
3
replies
1.2k
views
How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools?
bcftools
3.8 years ago by kl ▴ 10
0
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1
reply
2.9k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 10
0
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1
reply
9.4k
views
Comment: C: michigan imputation server
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 10
0
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11
replies
2.9k
views
Post-imputation steps (cleaning and converting to plink)
SNP MICHIGAN IMPUTATION SERVER
3.8 years ago by kl ▴ 10
0
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1
reply
2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
3.8 years ago by kl ▴ 10
0
votes
2
replies
2.9k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 43k • written 3.8 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 10
0
votes
0
replies
2.9k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
3.8 years ago by kl ▴ 10
0
votes
0
replies
606
views
Sequence of steps in quality control of genetic data
quality control imputation plink genome
updated 3.9 years ago by 141k • written 3.9 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Can I convert a beta to a standardised beta, only knowing the standard error of the beta without individual-level data?
SNP
4.1 years ago by kl ▴ 10
1
vote
1
reply
1.1k
views
Do you always need to clump polygenic risk scores?
snp
updated 4.2 years ago by ★ 4.7k • written 4.2 years ago by ▴ 10
0
votes
0
replies
1.8k
views
Linkage disequilibrium clumping in plink
LD clumping plink
5.2 years ago by kl ▴ 10
0
votes
1
reply
1.1k
views
Check whether two GWAS are from the same ancestry
allele frequency
updated 5.2 years ago by 87k • written 5.2 years ago by ▴ 10
1
vote
2
replies
1.4k
views
PLINK meta-analysis when there is SNP for just one study
PLINK
updated 5.3 years ago by 11k • written 5.3 years ago by ▴ 10
0
votes
0
replies
1.5k
views
BOLT LMM - invalid heritability estimate error
SNP genome
5.3 years ago by kl ▴ 10
8
votes
6
replies
2.4k
views
How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be read into R?
PLINK R
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 10
0
votes
1
reply
2.4k
views
Comment: C: How to convert a meta-analysis file from PLINK (.meta) to a .csv or.txt to be re
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 10
0
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0
replies
4.1k
views
Comment: C: Meta-analysis in PLINK - What to use in order to do a forest plot
5.4 years ago by kl ▴ 10
0
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1
reply
4.1k
views
Comment: C: Meta-analysis in PLINK - What to use in order to do a forest plot
5.4 years ago by kl ▴ 10
0
votes
1
reply
46k
views
Comment: A: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
5.5 years ago by kl ▴ 10
43 results • Page 1 of 1
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