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786
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Comment: Comment: Enrichment analyses (GO TERM etc)
7 months ago by kl ▴ 20
3
votes
4
replies
786
views
Enrichment analyses (GO TERM etc)
clusteprofiler somascan proteins enrichment
updated 7 months ago by ★ 2.0k • written 7 months ago by ▴ 20
2
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1
reply
677
views
ENRICHMENT USING CLUSTERPROFILER
clusterprofiler SOMASCAN proteins enrichment
updated 9 months ago by 89k • written 9 months ago by ▴ 20
0
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0
replies
474
views
Imputed data doesn't match directly genotyped APOE genotype
APOE directgenotyping imputation
16 months ago by kl ▴ 20
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0
replies
475
views
Can you use a polygenic risk score for a trait (e.g., BMI) in association analyses when it doesn't associate with BMI in the sample it is used?
polygenic-risk-score imputation
updated 16 months ago by 45k • written 16 months ago by ▴ 20
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0
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1.7k
views
Comment: Comment: Annotating file using bcftools
17 months ago by kl ▴ 20
0
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0
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1.7k
views
Comment: Comment: Annotating file using bcftools
updated 17 months ago by 166k • written 17 months ago by ▴ 20
0
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1
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1.7k
views
Comment: Comment: Annotating file using bcftools
17 months ago by kl ▴ 20
1
vote
5
replies
1.7k
views
Annotating file using bcftools
annotation plink bcftools
17 months ago by kl ▴ 20
0
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1
reply
2.2k
views
Comment: Comment: Post-imputation plot
17 months ago by kl ▴ 20
0
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7
replies
2.2k
views
Post-imputation plot
michigan-imputation-server quality-control
updated 17 months ago by 5.1k • written 17 months ago by ▴ 20
0
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0
replies
2.2k
views
Comment: Comment: Post-imputation plot
updated 17 months ago by 154k • written 17 months ago by ▴ 20
0
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1
reply
2.2k
views
Comment: Comment: Post-imputation plot
17 months ago by kl ▴ 20
0
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0
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401
views
Imputation advice
imputation
17 months ago by kl ▴ 20
0
votes
0
replies
461
views
Heterozygous haploid calls
plink genetics
21 months ago by kl ▴ 20
0
votes
0
replies
807
views
Comment: Comment: How to perform quality control for sex when there are no variants after threshol
22 months ago by kl ▴ 20
0
votes
2
replies
807
views
How to perform quality control for sex when there are no variants after thresholding for MAF
sex-check
updated 22 months ago by 45k • written 22 months ago by ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: Genetic data QC prior to imputation
22 months ago by kl ▴ 20
0
votes
1
reply
785
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Issue with genetic QC sex check
plink
22 months ago by kl ▴ 20
0
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0
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785
views
Comment: Comment: Issue with genetic QC sex check
22 months ago by kl ▴ 20
0
votes
0
replies
604
views
Negative F statistics for sex check in plink
plink check sex
22 months ago by kl ▴ 20
1
vote
3
replies
1.4k
views
Genetic data QC prior to imputation
imputation
updated 22 months ago by ★ 1.5k • written 22 months ago by ▴ 20
0
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0
replies
1.7k
views
Comment: Comment: SNP IDs
23 months ago by kl ▴ 20
0
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1
reply
1.7k
views
Comment: Comment: SNP IDs
23 months ago by kl ▴ 20
0
votes
1
reply
1.7k
views
Comment: Comment: SNP IDs
23 months ago by kl ▴ 20
4
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7
replies
1.7k
views
SNP IDs
SNP
23 months ago by kl ▴ 20
0
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1
reply
1.4k
views
Comment: Comment: QC of genetic data
2.0 years ago by kl ▴ 20
0
votes
3
replies
1.4k
views
QC of genetic data
PLINK
updated 2.0 years ago by ★ 3.1k • written 2.0 years ago by ▴ 20
0
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1
reply
1.3k
views
Repeated measures in GWAS and polygenic risk scores analyses
SNP
updated 23 months ago by 12k • written 5.5 years ago by ▴ 20
0
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1
reply
3.5k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
5.1 years ago by kl ▴ 20
1
vote
1
reply
1.4k
views
How to incorporate interaction between two alleles in ApoE for Alzheimer's polygenic risk score?
SNP
updated 5.1 years ago by 20 • written 6.8 years ago by ▴ 20
0
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1
reply
3.5k
views
Comment: C: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
5.1 years ago by kl ▴ 20
0
votes
1
reply
3.5k
views
Comment: Comment: How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
updated 23 months ago by 12k • written 5.1 years ago by ▴ 20
0
votes
7
replies
3.5k
views
How to perform GWAS using BOLT-LMM iteratively for many phenotypes in bash
gene genome
updated 23 months ago by 12k • written 5.1 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Match:0 michigan imputation server output
michigan imputation server
updated 5.2 years ago by 6.5k • written 5.2 years ago by ▴ 20
0
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1
reply
1.8k
views
Comment: C: How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools
5.2 years ago by kl ▴ 20
1
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3
replies
1.8k
views
How can you update vcf when one of the columns is CHR:POS:REF:ALT using bcftools?
bcftools
5.2 years ago by kl ▴ 20
0
votes
1
reply
4.1k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 5.2 years ago by 89k • written 5.2 years ago by ▴ 20
0
votes
1
reply
11k
views
Comment: C: michigan imputation server
updated 5.2 years ago by 154k • written 5.2 years ago by ▴ 20
0
votes
11
replies
4.1k
views
Post-imputation steps (cleaning and converting to plink)
SNP MICHIGAN IMPUTATION SERVER
5.2 years ago by kl ▴ 20
0
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1
reply
4.1k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
5.2 years ago by kl ▴ 20
0
votes
2
replies
4.1k
views
Comment: C: Post-imputation steps (cleaning and converting to plink)
updated 5.2 years ago by 45k • written 5.2 years ago by ▴ 20
0
votes
0
replies
4.1k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
updated 5.2 years ago by 154k • written 5.2 years ago by ▴ 20
0
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0
replies
4.1k
views
Comment: A: Post-imputation steps (cleaning and converting to plink)
5.2 years ago by kl ▴ 20
0
votes
0
replies
830
views
Sequence of steps in quality control of genetic data
quality control imputation plink genome
updated 5.3 years ago by 154k • written 5.3 years ago by ▴ 20
0
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1
reply
1.4k
views
Can I convert a beta to a standardised beta, only knowing the standard error of the beta without individual-level data?
SNP
5.6 years ago by kl ▴ 20
1
vote
1
reply
1.6k
views
Do you always need to clump polygenic risk scores?
snp
updated 5.6 years ago by ★ 4.8k • written 5.6 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Linkage disequilibrium clumping in plink
LD clumping plink
6.6 years ago by kl ▴ 20
0
votes
1
reply
1.4k
views
Check whether two GWAS are from the same ancestry
allele frequency
updated 6.7 years ago by 89k • written 6.7 years ago by ▴ 20
1
vote
2
replies
1.7k
views
PLINK meta-analysis when there is SNP for just one study
PLINK
updated 6.7 years ago by 12k • written 6.7 years ago by ▴ 20
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