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2
votes
4
replies
1.1k
views
Is miarma-Seq being maintained?
miarma-Seq miRNA RNA-Seq
4.8 years ago by RNAseqer ▴ 280
0
votes
0
replies
753
views
best practices/ pipeline for miRNA sequencing QC
RNA-Seq miRNA-seq QC
4.9 years ago by RNAseqer ▴ 280
0
votes
1
reply
1.3k
views
Is there a good reference matrix for miRNA array deconvolution?
miRNA microarray deconvolution
updated 5.1 years ago by • 0 • written 5.4 years ago by ▴ 280
0
votes
1
reply
893
views
constructing a reference matrix from affy 2.0 chip for a 4.0 chip.
affy miRNA Affymetrix Multispecies miRNA-1 Array
5.4 years ago by RNAseqer ▴ 280
1
vote
0
replies
2.8k
views
Comment: C: affy Transcriptome Analysis Console (TAC), export expression matrix?
5.4 years ago by RNAseqer ▴ 280
3
votes
2
replies
2.8k
views
affy Transcriptome Analysis Console (TAC), export expression matrix?
affy TAC expression matrix
5.4 years ago by RNAseqer ▴ 280
1
vote
2
replies
990
views
Small number of genes, drop in sft fit curve at higher threshold powers. why?
sft wgcna scale-free
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 280
0
votes
0
replies
1.5k
views
Comment: C: Excel: using quartiles & averageifs to combine probe values without outliers
5.6 years ago by RNAseqer ▴ 280
2
votes
1
reply
1.5k
views
Answer: C: Excel: using quartiles & averageifs to combine probe values without outliers
5.6 years ago by RNAseqer ▴ 280
3
votes
3
replies
1.5k
views
Excel: using quartiles & averageifs to combine probe values without outliers
excel outliers quartile averageifs matching
updated 5.6 years ago by 15k • written 5.6 years ago by ▴ 280
1
vote
0
replies
2.0k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
5.6 years ago by RNAseqer ▴ 280
0
votes
0
replies
2.0k
views
Comment: C: A good place to get immune cell deconvolution reference datasets?
5.6 years ago by RNAseqer ▴ 280
4
votes
4
replies
2.0k
views
A good place to get immune cell deconvolution reference datasets?
deconvolution reference datasets
updated 5.6 years ago by ★ 19k • written 5.6 years ago by ▴ 280
3
votes
3
replies
2.0k
views
Correlating WGCNA modules to Diseased/Not-Diseased Trait
WGCNA Modules Traits
updated 6.0 years ago by 3.9k • written 6.0 years ago by ▴ 280
0
votes
1
reply
1.2k
views
extracting a subset of probes from an expression object
subset probes microarray exprs
updated 6.1 years ago by 20 • written 6.3 years ago by ▴ 280
1
vote
1
reply
6.4k
views
how to adjust for continuous covariates in limma?
limma continuous covariates DE
updated 6.2 years ago by 22k • written 6.2 years ago by ▴ 280
0
votes
0
replies
737
views
summarized probes with expresso. how do i get transcript IDs?
affy expresso transcript ID
6.2 years ago by RNAseqer ▴ 280
0
votes
0
replies
1.1k
views
is there an function to summarize miRNA array probes but do nothing else?
summarise probes affy miRNA
6.3 years ago by RNAseqer ▴ 280
0
votes
0
replies
2.7k
views
Comment: C: changing feature names (row names) for expressionset object?
6.3 years ago by RNAseqer ▴ 280
0
votes
0
replies
2.7k
views
Comment: C: changing feature names (row names) for expressionset object?
6.3 years ago by RNAseqer ▴ 280
2
votes
5
replies
2.7k
views
changing feature names (row names) for expressionset object?
expressionset limma rownames
6.3 years ago by RNAseqer ▴ 280
0
votes
0
replies
1.0k
views
whats is the best normalization technique for miRNA microarray data?
normalization miRNA microarray
6.3 years ago by RNAseqer ▴ 280
0
votes
0
replies
7.0k
views
Comment: C: How to in R: Include principal components as covariates in analysis
6.3 years ago by RNAseqer ▴ 280
0
votes
1
reply
3.7k
views
Comment: C: pData function not found. substitute? "An end to end workflow for differential g
6.4 years ago by RNAseqer ▴ 280
6
votes
4
replies
3.7k
views
pData function not found. substitute? "An end to end workflow for differential gene expression using Affymetrix microarrays"
pvca bioconductor sva pData R
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 280
0
votes
0
replies
1.9k
views
making limma design matrix with covariates, a strange labelling issue?
limma design matrix labels columns
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
7.0k
views
Comment: C: How to in R: Include principal components as covariates in analysis
6.4 years ago by RNAseqer ▴ 280
1
vote
5
replies
7.0k
views
How to in R: Include principal components as covariates in analysis
pca covariates principal components
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 280
3
votes
1
reply
888
views
batchCombat package for R?
batchCombat R
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 280
3
votes
3
replies
3.4k
views
Principal component analysis of SVA's surrogate variables
sva stdev surrogate variables
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 280
0
votes
0
replies
3.4k
views
Comment: C: Principal component analysis of SVA's surrogate variables
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
2.0k
views
contrast matrix design question, limma-sva
contrast matrix sva limma
6.4 years ago by RNAseqer ▴ 280
0
votes
0
replies
1.3k
views
sva pprob.b all 0s?
sva microarray r pprob.b
6.4 years ago by RNAseqer ▴ 280
1
vote
0
replies
19k
views
Comment: C: Setting a threshold for FDR correction
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 280
1
vote
0
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
0
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
0
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
2
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
0
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
2
replies
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
0
votes
1
reply
6.0k
views
Comment: C: No significant DEG: A request to double check my commands for limma.
6.4 years ago by RNAseqer ▴ 280
11
votes
22
replies
6.0k
views
No significant DEG: A request to double check my commands for limma.
limma differential-gene-expression
updated 17 months ago by 45k • written 6.4 years ago by ▴ 280
1
vote
0
replies
8.7k
views
Comment: C: how do you remove the trace in heatmap.2 in R?
6.4 years ago by RNAseqer ▴ 280
7
votes
3
replies
8.7k
views
how do you remove the trace in heatmap.2 in R?
heatmap.2 r microarray heat map
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 280
1
vote
0
replies
1.7k
views
Comment: C: limma, best practices review paper?
6.4 years ago by RNAseqer ▴ 280
2
votes
2
replies
1.7k
views
limma, best practices review paper?
R limma microarray
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 280
133 results • Page 2 of 3
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