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1
vote
8
replies
4.2k
views
cutadapt error problem
next-gen cutadapt
updated 19 months ago by 45k • written 7.1 years ago by ▴ 20
7
votes
6
replies
3.3k
views
7 follow
batch renaming FASTQ files
fastq rename batch
updated 2.8 years ago by 8.7k • written 4.7 years ago by ▴ 20
1
vote
1
reply
1000
views
extract entire header from BED file to FASTA
bedtools getfasta
updated 4.2 years ago by ★ 1.5k • written 4.2 years ago by ▴ 20
1
vote
1
reply
1.4k
views
bbmap seal.sh error
seal.sh bbmap
updated 4.3 years ago by 35k • written 4.3 years ago by ▴ 20
1
vote
1
reply
1.8k
views
single- indexed sequenced as paired end
Chip-seq NGS Illumina
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 20
0
votes
0
replies
1.0k
views
Comment: Comment: Alignment in SAM but not in counts from STAR aligner
4.6 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.3k
views
Answer: Answer: Create Mutational signature plot from vcf file.
4.6 years ago by amitpande74 ▴ 20
0
votes
0
replies
3.0k
views
Comment: Comment: align interleaved fastq file
4.6 years ago by amitpande74 ▴ 20
0
votes
0
replies
3.0k
views
Comment: Comment: align interleaved fastq file
4.6 years ago by amitpande74 ▴ 20
0
votes
2
replies
3.0k
views
Comment: Comment: align interleaved fastq file
4.6 years ago by amitpande74 ▴ 20
2
votes
5
replies
3.0k
views
align interleaved fastq file
interleaved fastq align
updated 4.6 years ago by 154k • written 4.6 years ago by ▴ 20
2
votes
13
replies
2.5k
views
complexheatMap runtime error
Complexheatmap R
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Answer: C: complexheatMap runtime error
4.8 years ago by amitpande74 ▴ 20
0
votes
0
replies
2.5k
views
Comment: C: complexheatMap runtime error
4.8 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: complexheatMap runtime error
4.8 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: complexheatMap runtime error
4.8 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: complexheatMap runtime error
4.8 years ago by amitpande74 ▴ 20
3
votes
3
replies
1.4k
views
Read detection with pattern in paired end FASTQ file
FASTQ paired end Awk
updated 4.8 years ago by 154k • written 4.8 years ago by ▴ 20
0
votes
1
reply
2.5k
views
Comment: C: complexheatMap runtime error
4.9 years ago by amitpande74 ▴ 20
1
vote
1
reply
3.1k
views
Comment: C: bowtie2 shell script
4.9 years ago by amitpande74 ▴ 20
0
votes
1
reply
3.1k
views
Comment: C: bowtie2 shell script
4.9 years ago by amitpande74 ▴ 20
0
votes
0
replies
3.1k
views
Comment: C: bowtie2 shell script
4.9 years ago by amitpande74 ▴ 20
0
votes
1
reply
3.1k
views
Comment: C: bowtie2 shell script
4.9 years ago by amitpande74 ▴ 20
6
votes
12
replies
3.1k
views
bowtie2 shell script
Bowtie2 Shellscript
updated 4.9 years ago by 90k • written 4.9 years ago by ▴ 20
0
votes
0
replies
1.1k
views
Comment: C: bowtie2 making new indices
4.9 years ago by amitpande74 ▴ 20
0
votes
0
replies
1.1k
views
Comment: C: bowtie2 making new indices
4.9 years ago by amitpande74 ▴ 20
0
votes
4
replies
1.1k
views
bowtie2 making new indices
bowtie2 new indices
4.9 years ago by amitpande74 ▴ 20
0
votes
0
replies
2.9k
views
Comment: C: bedtools multiple BAM files
5.0 years ago by amitpande74 ▴ 20
0
votes
2
replies
2.9k
views
Comment: A: bedtools multiple BAM files
5.0 years ago by amitpande74 ▴ 20
3
votes
14
replies
2.9k
views
bedtools multiple BAM files
Bedtools shellscript BAMtoBED
5.0 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: bedtools multiple BAM files
5.0 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: bedtools multiple BAM files
5.0 years ago by amitpande74 ▴ 20
0
votes
1
reply
2.9k
views
Comment: C: bedtools multiple BAM files
5.0 years ago by amitpande74 ▴ 20
0
votes
1
reply
976
views
fasta file extraction
fasta sed awk
updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 20
9
votes
11
replies
3.3k
views
7 follow
add nucleotide in the begining of fasta sequences
fasta sequence add nucleotide
updated 5.1 years ago by 8.7k • written 5.1 years ago by ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: add nucleotide in the begining of fasta sequences
5.1 years ago by amitpande74 ▴ 20
0
votes
1
reply
3.3k
views
Comment: C: add nucleotide in the begining of fasta sequences
5.1 years ago by amitpande74 ▴ 20
7
votes
4
replies
1.7k
views
grep -v command
grep chr1
updated 5.3 years ago by 166k • written 5.3 years ago by ▴ 20
1
vote
1
reply
4.8k
views
conda install homer
conda homer
5.4 years ago by amitpande74 ▴ 20
1
vote
1
reply
2.3k
views
salmon shell script to automate quant
shellscript salmon
updated 5.5 years ago by 90k • written 5.5 years ago by ▴ 20
0
votes
1
reply
2.1k
views
Comment: C: bulkdownload fastq files from ENA
5.5 years ago by amitpande74 ▴ 20
2
votes
3
replies
2.1k
views
bulkdownload fastq files from ENA
fastq ENA
updated 2.6 years ago by 45k • written 5.5 years ago by ▴ 20
1
vote
6
replies
2.1k
views
BLAT error while execution
blat error
updated 5.6 years ago by 90k • written 5.6 years ago by ▴ 20
0
votes
0
replies
2.1k
views
Comment: C: BLAT error while execution
5.6 years ago by amitpande74 ▴ 20
0
votes
2
replies
2.1k
views
Comment: A: BLAT error while execution
5.6 years ago by amitpande74 ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: bowtie2 aligment problems
5.7 years ago by amitpande74 ▴ 20
0
votes
1
reply
1.6k
views
Comment: C: bowtie2 aligment problems
5.7 years ago by amitpande74 ▴ 20
0
votes
1
reply
1.6k
views
Comment: A: bowtie2 aligment problems
5.7 years ago by amitpande74 ▴ 20
0
votes
8
replies
1.6k
views
bowtie2 aligment problems
alignment next-gen bowtie2
5.7 years ago by amitpande74 ▴ 20
1
vote
2
replies
995
views
fetching fastq files for all samples
Fastq
updated 2.7 years ago by 45k • written 5.8 years ago by ▴ 20
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