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3
votes
4
replies
2.1k
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RRBS analysis using methylkit with 2 variables
methylkit RRBS DMR
6.0 years ago by maria2019 ▴ 250
0
votes
0
replies
1.8k
views
Comment: C: miRNA fastqc sequence length distribution with UMI
6.1 years ago by maria2019 ▴ 250
2
votes
2
replies
1.8k
views
miRNA fastqc sequence length distribution with UMI
miRNA fastqc cutadapt trimming Qiagene
updated 6.1 years ago by 15k • written 6.1 years ago by ▴ 250
3
votes
2
replies
2.5k
views
why my WGS bam file (after alignment) shows more reads than the starting fastq file
WGS fastqc qualimap QC total read
6.1 years ago by maria2019 ▴ 250
0
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0
replies
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
0
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1
reply
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
0
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1
reply
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
0
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0
replies
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
0
votes
1
reply
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
0
votes
0
replies
3.0k
views
Comment: C: Can I filter mRNA from bulk RNA-seq reads?
6.1 years ago by maria2019 ▴ 250
5
votes
11
replies
3.0k
views
Can I filter mRNA from bulk RNA-seq reads?
mRNA-seq bulk RNA-seq
updated 6.1 years ago by ▴ 160 • written 6.1 years ago by ▴ 250
1
vote
0
replies
3.9k
views
Comment: C: Detecting outlier DESeq2
6.1 years ago by maria2019 ▴ 250
0
votes
1
reply
3.9k
views
Comment: C: Detecting outlier DESeq2
6.1 years ago by maria2019 ▴ 250
16
votes
6
replies
3.8k
views
Batch effect problem DEG, DESseq2
DESeq2 batch-effect RNA-seq DEG
updated 2.0 years ago by 90k • written 6.1 years ago by ▴ 250
0
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1
reply
3.8k
views
Comment: C: Batch effect problem DEG, DESseq2
6.1 years ago by maria2019 ▴ 250
0
votes
1
reply
3.9k
views
Comment: C: Detecting outlier DESeq2
6.1 years ago by maria2019 ▴ 250
7
votes
6
replies
3.9k
views
Detecting outlier DESeq2
deseq2 pca DEG bulk RNA-seq
updated 6.1 years ago by 89k • written 6.1 years ago by ▴ 250
0
votes
1
reply
9.9k
views
Comment: C: DESeq2 design with multiple conditions
updated 6.2 years ago by 45k • written 6.2 years ago by ▴ 250
0
votes
1
reply
9.9k
views
Comment: C: DESeq2 design with multiple conditions
6.2 years ago by maria2019 ▴ 250
0
votes
1
reply
9.9k
views
Comment: C: DESeq2 design with multiple conditions
6.2 years ago by maria2019 ▴ 250
0
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0
replies
9.9k
views
Comment: C: DESeq2 design with multiple conditions
6.2 years ago by maria2019 ▴ 250
0
votes
2
replies
8.9k
views
Comment: C: Strange MT% in 10X scRNA-seq data analysis
6.5 years ago by maria2019 ▴ 250
0
votes
1
reply
2.9k
views
Comment: C: order of trimming for RNA-seq QC
6.5 years ago by maria2019 ▴ 250
2
votes
3
replies
2.9k
views
order of trimming for RNA-seq QC
RNA-Seq cutadapt QC fastQC
6.5 years ago by maria2019 ▴ 250
0
votes
0
replies
5.3k
views
Comment: C: What is the expected rate of SNPs within a human exome sequencing with HiSeq?
6.6 years ago by maria2019 ▴ 250
0
votes
0
replies
3.1k
views
Comment: C: why does qualimap2 shows different results for number of mismatches for bowtie2
6.6 years ago by maria2019 ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: Can you use germline variation calling on a normal embryonic stem cell line?
6.6 years ago by maria2019 ▴ 250
7
votes
4
replies
1.5k
views
Can you use germline variation calling on a normal embryonic stem cell line?
SNP WES embryonic cell germline variation GATK
updated 6.6 years ago by 24k • written 6.6 years ago by ▴ 250
0
votes
0
replies
3.0k
views
Comment: C: DNAseq pipeline steps
6.6 years ago by maria2019 ▴ 250
0
votes
6
replies
3.1k
views
why does qualimap2 shows different results for number of mismatches for bowtie2 and BWAMEM?
WES qualimap bowtie2 bwamem
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 250
0
votes
0
replies
3.1k
views
Comment: C: why does qualimap2 shows different results for number of mismatches for bowtie2
6.6 years ago by maria2019 ▴ 250
0
votes
0
replies
3.1k
views
Comment: C: why does qualimap2 shows different results for number of mismatches for bowtie2
6.6 years ago by maria2019 ▴ 250
0
votes
1
reply
1.8k
views
Should I use the same reference indexing command of bwa for WGS and WES analysis?
bwa mem indexing WGS WES
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 250
0
votes
1
reply
31k
views
Comment: C: What is the right illumina universal adapter sequence for trimming paired-end re
6.6 years ago by maria2019 ▴ 250
0
votes
1
reply
1.4k
views
How many SNPs I should expect to see in a normal human embryonic stem cell (hESC) with WES analysis?
SNP hESC WES samtools
6.6 years ago by maria2019 ▴ 250
0
votes
0
replies
1.6k
views
Comment: C: Should I specify exome region to do the QC with qualimap2 for WES analysis?
6.6 years ago by maria2019 ▴ 250
0
votes
1
reply
1.6k
views
Comment: C: Should I specify exome region to do the QC with qualimap2 for WES analysis?
6.6 years ago by maria2019 ▴ 250
1
vote
0
replies
2.4k
views
Comment: C: Does strange fastQC GC content report cause a problem for WES analysis?
6.6 years ago by maria2019 ▴ 250
4
votes
6
replies
31k
views
6 follow
What is the right illumina universal adapter sequence for trimming paired-end reads?
WES fastqc trimadaptor
updated 6.6 years ago by 5.9k • written 6.6 years ago by ▴ 250
3
votes
2
replies
2.4k
views
Does strange fastQC GC content report cause a problem for WES analysis?
fastQC WES GC content
updated 6.6 years ago by 13k • written 6.6 years ago by ▴ 250
2
votes
5
replies
1.6k
views
Should I specify exome region to do the QC with qualimap2 for WES analysis?
qualimap2 WES QC
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 250
91 results • Page 2 of 2
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