Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
0
votes
7
replies
505
views
Is it possible to query column of particular sample on VCF?
vcf
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
0
replies
505
views
Answer: Answer: Is it possible to query column of particular sample on VCF?
8 weeks ago by optimistsso4co3 ▴ 90
3
votes
6
replies
445
views
How to filter VCF for only variants present in particular sample?
vcf
8 weeks ago by optimistsso4co3 ▴ 90
1
vote
0
replies
445
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
0
replies
445
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
1
reply
445
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
1
reply
445
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
0
replies
505
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
1
reply
505
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
8 weeks ago by optimistsso4co3 ▴ 90
0
votes
1
reply
505
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
8 weeks ago by optimistsso4co3 ▴ 90
1
vote
2
replies
271
views
Is it possible to annotate each person individually with VEP?
VEP
updated 8 weeks ago by 810 • written 8 weeks ago by ▴ 90
1
vote
1
reply
191
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 9 weeks ago by 2.3k • written 9 weeks ago by ▴ 90
0
votes
1
reply
218
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
9 weeks ago by optimistsso4co3 ▴ 90
0
votes
0
replies
218
views
Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
9 weeks ago by optimistsso4co3 ▴ 90
0
votes
0
replies
215
views
How to control number of cores GATK can use?
gatk
3 months ago by optimistsso4co3 ▴ 90
0
votes
0
replies
453
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
3 months ago by optimistsso4co3 ▴ 90
0
votes
0
replies
222
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
3 months ago by optimistsso4co3 ▴ 90
0
votes
0
replies
301
views
Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
3 months ago by optimistsso4co3 ▴ 90
0
votes
2
replies
301
views
Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
3 months ago by optimistsso4co3 ▴ 90
1
vote
1
reply
210
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 4 months ago by 37k • written 4 months ago by ▴ 90
0
votes
3
replies
262
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 4 months ago by ▴ 780 • written 4 months ago by ▴ 90
0
votes
0
replies
183
views
How to extract region from GVCF file?
GVCF
5 months ago by optimistsso4co3 ▴ 90
1
vote
1
reply
183
views
How to calculate indels per individual?
vcf
updated 7 months ago by 149k • written 7 months ago by ▴ 90
1
vote
1
reply
427
views
How to prepare vcf for use with Picard?
picard
updated 8 months ago by 149k • written 8 months ago by ▴ 90
0
votes
0
replies
201
views
How to fill vcf ALT field for sites where it's missing?
vcf
8 months ago by optimistsso4co3 ▴ 90
0
votes
0
replies
339
views
Comment: Comment: How to correct for allele frequency mismatches?
8 months ago by optimistsso4co3 ▴ 90
2
votes
2
replies
339
views
How to correct for allele frequency mismatches?
plink
8 months ago by optimistsso4co3 ▴ 90
6
votes
10
replies
826
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 9 months ago by 21k • written 9 months ago by ▴ 90
1
vote
0
replies
826
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
9 months ago by optimistsso4co3 ▴ 90
0
votes
0
replies
826
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
9 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
826
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
9 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
826
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
9 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
301
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 9 months ago by 149k • written 9 months ago by ▴ 90
0
votes
0
replies
222
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
9 months ago by optimistsso4co3 ▴ 90
2
votes
1
reply
271
views
How to extract specific location in .bam files
bam
updated 9 months ago by 120k • written 9 months ago by ▴ 90
0
votes
1
reply
354
views
Is it correct to merge multiple gvcf from separate variant calling?
gatk
updated 10 months ago by 21k • written 10 months ago by ▴ 90
0
votes
0
replies
404
views
Comment: Comment: Wha does combineGVCFs does to loci with variant only in gVCF from another analys
10 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
404
views
Wha does combineGVCFs does to loci with variant only in gVCF from another analysis?
gatk
10 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
626
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
10 months ago by optimistsso4co3 ▴ 90
0
votes
1
reply
626
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
10 months ago by optimistsso4co3 ▴ 90
0
votes
5
replies
626
views
What are "must have" data types one should extract from WGS .fq data?
wgs
updated 10 months ago by 149k • written 10 months ago by ▴ 90
0
votes
1
reply
479
views
Comment: Comment: Is it ok to replace missing WGS calls with reference notation "0/0"?
10 months ago by optimistsso4co3 ▴ 90
6
votes
3
replies
479
views
Is it ok to replace missing WGS calls with reference notation "0/0"?
wgs
updated 10 months ago by 149k • written 10 months ago by ▴ 90
4
votes
1
reply
1.4k
views
Can someone explain PLINK allele REF/ALT management strategy?
plink
updated 10 months ago by 9.7k • written 10 months ago by ▴ 90
2
votes
1
reply
419
views
What is the largest freely available dataset of WGS samples?
wgs
updated 11 months ago by ▴ 240 • written 11 months ago by ▴ 90
0
votes
1
reply
656
views
How to best predict effect for each variant and count specific effect found in each individual using variant effect predictor?
vcf vep
updated 12 months ago by 23k • written 12 months ago by ▴ 90
0
votes
1
reply
1.1k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
14 months ago by optimistsso4co3 ▴ 90
0
votes
2
replies
1.1k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
14 months ago by optimistsso4co3 ▴ 90
1
vote
5
replies
1.1k
views
How to pass custom software specific variables to nf-core/sarek nextflow pipeline?
wgs
updated 12 months ago by ▴ 960 • written 14 months ago by ▴ 90
0
votes
0
replies
692
views
Comment: Comment: How to paralle trim_galore for single sample?
14 months ago by optimistsso4co3 ▴ 90
59 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6