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0
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98
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Is there a array-based population dataset with phenotypes like eye colour available?
gwas
15 days ago by optimistsso4co3 ▴ 100
2
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1
reply
257
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fastQC - how to know if sample is good quality ?
fastqc
updated 21 days ago by 38k • written 21 days ago by ▴ 100
0
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0
replies
217
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Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
6 weeks ago by optimistsso4co3 ▴ 100
0
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2
replies
297
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Can you apply Base Score Recalibration in parallel?
wgs
updated 7 weeks ago by 2.2k • written 7 weeks ago by ▴ 100
0
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1
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410
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Comment: Comment: How to interpret deletion the length of chromosome?
9 weeks ago by optimistsso4co3 ▴ 100
0
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3
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410
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How to interpret deletion the length of chromosome?
del
updated 9 weeks ago by 153k • written 9 weeks ago by ▴ 100
0
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7
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640
views
Is it possible to query column of particular sample on VCF?
vcf
7 months ago by optimistsso4co3 ▴ 100
0
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0
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640
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Answer: Answer: Is it possible to query column of particular sample on VCF?
7 months ago by optimistsso4co3 ▴ 100
3
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6
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619
views
How to filter VCF for only variants present in particular sample?
vcf
7 months ago by optimistsso4co3 ▴ 100
1
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0
replies
619
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
7 months ago by optimistsso4co3 ▴ 100
0
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0
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619
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
7 months ago by optimistsso4co3 ▴ 100
0
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1
reply
619
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
7 months ago by optimistsso4co3 ▴ 100
0
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1
reply
619
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
7 months ago by optimistsso4co3 ▴ 100
0
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0
replies
640
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
7 months ago by optimistsso4co3 ▴ 100
0
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1
reply
640
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
7 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
640
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
7 months ago by optimistsso4co3 ▴ 100
1
vote
2
replies
361
views
Is it possible to annotate each person individually with VEP?
VEP
updated 7 months ago by 2.2k • written 7 months ago by ▴ 100
1
vote
1
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275
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 8 months ago by 2.6k • written 8 months ago by ▴ 100
0
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1
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335
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
8 months ago by optimistsso4co3 ▴ 100
0
votes
0
replies
335
views
Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
8 months ago by optimistsso4co3 ▴ 100
0
votes
0
replies
267
views
How to control number of cores GATK can use?
gatk
9 months ago by optimistsso4co3 ▴ 100
0
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0
replies
667
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
9 months ago by optimistsso4co3 ▴ 100
0
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0
replies
287
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Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
9 months ago by optimistsso4co3 ▴ 100
0
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0
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405
views
Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
9 months ago by optimistsso4co3 ▴ 100
0
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2
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405
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Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
9 months ago by optimistsso4co3 ▴ 100
1
vote
1
reply
307
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 10 months ago by 38k • written 10 months ago by ▴ 100
0
votes
3
replies
355
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 10 months ago by ▴ 810 • written 10 months ago by ▴ 100
0
votes
0
replies
252
views
How to extract region from GVCF file?
GVCF
11 months ago by optimistsso4co3 ▴ 100
1
vote
1
reply
245
views
How to calculate indels per individual?
vcf
updated 13 months ago by 153k • written 13 months ago by ▴ 100
1
vote
1
reply
603
views
How to prepare vcf for use with Picard?
picard
updated 14 months ago by 153k • written 14 months ago by ▴ 100
0
votes
0
replies
276
views
How to fill vcf ALT field for sites where it's missing?
vcf
14 months ago by optimistsso4co3 ▴ 100
0
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0
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434
views
Comment: Comment: How to correct for allele frequency mismatches?
14 months ago by optimistsso4co3 ▴ 100
2
votes
2
replies
434
views
How to correct for allele frequency mismatches?
plink
14 months ago by optimistsso4co3 ▴ 100
6
votes
10
replies
994
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 15 months ago by 21k • written 15 months ago by ▴ 100
1
vote
0
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994
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
15 months ago by optimistsso4co3 ▴ 100
0
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0
replies
994
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
15 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
994
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
15 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
994
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
15 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
401
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 15 months ago by 153k • written 15 months ago by ▴ 100
0
votes
0
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279
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
15 months ago by optimistsso4co3 ▴ 100
2
votes
1
reply
352
views
How to extract specific location in .bam files
bam
updated 15 months ago by 127k • written 15 months ago by ▴ 100
0
votes
1
reply
450
views
Is it correct to merge multiple gvcf from separate variant calling?
gatk
updated 16 months ago by 21k • written 16 months ago by ▴ 100
0
votes
0
replies
526
views
Comment: Comment: Wha does combineGVCFs does to loci with variant only in gVCF from another analys
16 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
526
views
Wha does combineGVCFs does to loci with variant only in gVCF from another analysis?
gatk
16 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
833
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
16 months ago by optimistsso4co3 ▴ 100
0
votes
1
reply
833
views
Comment: Comment: What are "must have" data types one should extract from WGS .fq data?
16 months ago by optimistsso4co3 ▴ 100
0
votes
5
replies
833
views
What are "must have" data types one should extract from WGS .fq data?
wgs
updated 16 months ago by 153k • written 16 months ago by ▴ 100
0
votes
1
reply
572
views
Comment: Comment: Is it ok to replace missing WGS calls with reference notation "0/0"?
16 months ago by optimistsso4co3 ▴ 100
6
votes
3
replies
572
views
Is it ok to replace missing WGS calls with reference notation "0/0"?
wgs
updated 16 months ago by 153k • written 16 months ago by ▴ 100
5
votes
1
reply
2.0k
views
Can someone explain PLINK allele REF/ALT management strategy?
plink
updated 16 months ago by 10.0k • written 16 months ago by ▴ 100
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