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412
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Protocol to combine WGS with Nanopore for Structural Variant confirmation?
wgs
updated 8 weeks ago by ★ 1.9k • written 8 weeks ago by ▴ 110
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0
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272
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Normalisation of PLINK/VCF files?
plink
6 months ago by optimistsso4co3 ▴ 110
1
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0
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424
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Answer: Answer: Prediction of T2D, based on GWAS rsIDs
6 months ago by optimistsso4co3 ▴ 110
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0
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385
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Guide for ICD-10 to EFO conversion?
icd10 efo
7 months ago by optimistsso4co3 ▴ 110
0
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0
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656
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Comment: Comment: Don't see uploaded files for linking in EGA (European Genome Archive)
11 months ago by optimistsso4co3 ▴ 110
0
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2
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656
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Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
11 months ago by optimistsso4co3 ▴ 110
2
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1
reply
868
views
How to Remove Phasing Information from a VCF File?
phasing
updated 11 months ago by 161k • written 11 months ago by ▴ 110
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1
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1.9k
views
Comment: Comment: Singularity image is not working in nextflow
12 months ago by optimistsso4co3 ▴ 110
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2
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1.9k
views
Comment: Comment: Singularity image is not working in nextflow
12 months ago by optimistsso4co3 ▴ 110
3
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6
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1.9k
views
Singularity image is not working in nextflow
nextflow singularity
updated 12 months ago by 82k • written 12 months ago by ▴ 110
0
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0
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278
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Is there a array-based population dataset with phenotypes like eye colour available?
gwas
13 months ago by optimistsso4co3 ▴ 110
2
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1
reply
507
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fastQC - how to know if sample is good quality ?
fastqc
updated 14 months ago by 43k • written 14 months ago by ▴ 110
0
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0
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436
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Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
14 months ago by optimistsso4co3 ▴ 110
0
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2
replies
593
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 14 months ago by 3.9k • written 14 months ago by ▴ 110
0
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1
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765
views
Comment: Comment: How to interpret deletion the length of chromosome?
15 months ago by optimistsso4co3 ▴ 110
0
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3
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765
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How to interpret deletion the length of chromosome?
del
updated 15 months ago by 161k • written 15 months ago by ▴ 110
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7
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1.0k
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Is it possible to query column of particular sample on VCF?
vcf
21 months ago by optimistsso4co3 ▴ 110
0
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0
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1.0k
views
Answer: Answer: Is it possible to query column of particular sample on VCF?
21 months ago by optimistsso4co3 ▴ 110
3
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6
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1.2k
views
How to filter VCF for only variants present in particular sample?
vcf
21 months ago by optimistsso4co3 ▴ 110
1
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0
replies
1.2k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
21 months ago by optimistsso4co3 ▴ 110
0
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0
replies
1.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
21 months ago by optimistsso4co3 ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
21 months ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.2k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
21 months ago by optimistsso4co3 ▴ 110
0
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0
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1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
21 months ago by optimistsso4co3 ▴ 110
0
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1
reply
1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
21 months ago by optimistsso4co3 ▴ 110
0
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1
reply
1.0k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
21 months ago by optimistsso4co3 ▴ 110
1
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2
replies
554
views
Is it possible to annotate each person individually with VEP?
VEP
updated 21 months ago by 3.9k • written 21 months ago by ▴ 110
1
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1
reply
449
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 21 months ago by 2.8k • written 21 months ago by ▴ 110
0
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1
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556
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
21 months ago by optimistsso4co3 ▴ 110
0
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0
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556
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Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
21 months ago by optimistsso4co3 ▴ 110
0
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0
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387
views
How to control number of cores GATK can use?
gatk
22 months ago by optimistsso4co3 ▴ 110
0
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0
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958
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
23 months ago by optimistsso4co3 ▴ 110
0
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0
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440
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
23 months ago by optimistsso4co3 ▴ 110
0
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0
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624
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Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
23 months ago by optimistsso4co3 ▴ 110
0
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2
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624
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Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
23 months ago by optimistsso4co3 ▴ 110
1
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1
reply
608
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 23 months ago by 43k • written 23 months ago by ▴ 110
0
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3
replies
595
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 23 months ago by ▴ 830 • written 23 months ago by ▴ 110
0
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0
replies
438
views
How to extract region from GVCF file?
GVCF
2.0 years ago by optimistsso4co3 ▴ 110
1
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1
reply
425
views
How to calculate indels per individual?
vcf
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 110
1
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1
reply
1.1k
views
How to prepare vcf for use with Picard?
picard
updated 2.3 years ago by 161k • written 2.3 years ago by ▴ 110
0
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0
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424
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How to fill vcf ALT field for sites where it's missing?
vcf
2.3 years ago by optimistsso4co3 ▴ 110
0
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0
replies
751
views
Comment: Comment: How to correct for allele frequency mismatches?
2.3 years ago by optimistsso4co3 ▴ 110
2
votes
2
replies
751
views
How to correct for allele frequency mismatches?
plink
2.3 years ago by optimistsso4co3 ▴ 110
6
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10
replies
1.6k
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 2.4 years ago by 22k • written 2.4 years ago by ▴ 110
1
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0
replies
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.4 years ago by optimistsso4co3 ▴ 110
0
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0
replies
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.4 years ago by optimistsso4co3 ▴ 110
0
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1
reply
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.4 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
1.6k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
2.4 years ago by optimistsso4co3 ▴ 110
0
votes
1
reply
581
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 2.4 years ago by 161k • written 2.4 years ago by ▴ 110
0
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0
replies
451
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
2.4 years ago by optimistsso4co3 ▴ 110
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