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1.0k
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Protocol to combine WGS with Nanopore for Structural Variant confirmation?
wgs
updated 20 months ago by ★ 2.0k • written 20 months ago by ▴ 140
0
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0
replies
509
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Normalisation of PLINK/VCF files?
plink
2.0 years ago by optimistsso4co3 ▴ 140
1
vote
0
replies
867
views
Answer: Answer: Prediction of T2D, based on GWAS rsIDs
2.1 years ago by optimistsso4co3 ▴ 140
0
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0
replies
780
views
Guide for ICD-10 to EFO conversion?
icd10 efo
2.1 years ago by optimistsso4co3 ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: Don't see uploaded files for linking in EGA (European Genome Archive)
2.5 years ago by optimistsso4co3 ▴ 140
0
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2
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1.4k
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Don't see uploaded files for linking in EGA (European Genome Archive)
EGA
2.5 years ago by optimistsso4co3 ▴ 140
2
votes
2
replies
1.8k
views
How to Remove Phasing Information from a VCF File?
phasing
updated 3 months ago by • 0 • written 2.5 years ago by ▴ 140
0
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1
reply
4.0k
views
Comment: Comment: Singularity image is not working in nextflow
2.6 years ago by optimistsso4co3 ▴ 140
0
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2
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4.0k
views
Comment: Comment: Singularity image is not working in nextflow
2.6 years ago by optimistsso4co3 ▴ 140
3
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6
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4.0k
views
Singularity image is not working in nextflow
nextflow singularity
updated 2.6 years ago by 90k • written 2.6 years ago by ▴ 140
0
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0
replies
476
views
Is there a array-based population dataset with phenotypes like eye colour available?
gwas
2.7 years ago by optimistsso4co3 ▴ 140
2
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1
reply
873
views
fastQC - how to know if sample is good quality ?
fastqc
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 140
0
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0
replies
693
views
Protocol to detect chromosomal ploidy from WGS VCF?
wgs ploidy
2.8 years ago by optimistsso4co3 ▴ 140
0
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2
replies
981
views
Can you apply Base Score Recalibration in parallel?
wgs
updated 2.8 years ago by 5.2k • written 2.8 years ago by ▴ 140
0
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1
reply
1.3k
views
Comment: Comment: How to interpret deletion the length of chromosome?
2.8 years ago by optimistsso4co3 ▴ 140
0
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3
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1.3k
views
How to interpret deletion the length of chromosome?
del
updated 2.8 years ago by 166k • written 2.8 years ago by ▴ 140
0
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7
replies
1.9k
views
Is it possible to query column of particular sample on VCF?
vcf
3.3 years ago by optimistsso4co3 ▴ 140
0
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0
replies
1.9k
views
Answer: Answer: Is it possible to query column of particular sample on VCF?
3.3 years ago by optimistsso4co3 ▴ 140
4
votes
6
replies
2.2k
views
How to filter VCF for only variants present in particular sample?
vcf
3.3 years ago by optimistsso4co3 ▴ 140
1
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0
replies
2.2k
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Answer: Answer: How to filter VCF for only variants present in particular sample?
3.3 years ago by optimistsso4co3 ▴ 140
0
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0
replies
2.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
3.3 years ago by optimistsso4co3 ▴ 140
0
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1
reply
2.2k
views
Comment: Comment: How to filter VCF for only variants present in particular sample?
3.3 years ago by optimistsso4co3 ▴ 140
0
votes
1
reply
2.2k
views
Answer: Answer: How to filter VCF for only variants present in particular sample?
3.3 years ago by optimistsso4co3 ▴ 140
0
votes
0
replies
1.9k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
3.3 years ago by optimistsso4co3 ▴ 140
0
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1
reply
1.9k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
3.3 years ago by optimistsso4co3 ▴ 140
0
votes
1
reply
1.9k
views
Comment: Comment: Is it possible to query column of particular sample on VCF?
3.3 years ago by optimistsso4co3 ▴ 140
1
vote
2
replies
907
views
Is it possible to annotate each person individually with VEP?
VEP
updated 3.3 years ago by 5.2k • written 3.3 years ago by ▴ 140
1
vote
1
reply
836
views
Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
23andme
updated 3.3 years ago by 2.9k • written 3.3 years ago by ▴ 140
0
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1
reply
934
views
Where to find Structural variant database dgvMerged for ANNOVAR?
annovar
3.3 years ago by optimistsso4co3 ▴ 140
0
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0
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934
views
Answer: Answer: Where to find Structural variant database dgvMerged for ANNOVAR?
3.3 years ago by optimistsso4co3 ▴ 140
0
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0
replies
590
views
How to control number of cores GATK can use?
gatk
3.4 years ago by optimistsso4co3 ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: Research Scientist (Fungal & Algal Program)
3.4 years ago by optimistsso4co3 ▴ 140
0
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1
reply
842
views
Do you have to select "pulled" or "final" bam in MELT mobile element discovery step of genotyping?
melt
updated 9 months ago by • 0 • written 3.4 years ago by ▴ 140
0
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0
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1.1k
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Comment: Comment: Mobile element discovery with MELT brings different results when chromosomes are
3.4 years ago by optimistsso4co3 ▴ 140
0
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2
replies
1.1k
views
Mobile element discovery with MELT brings different results when chromosomes are analysed separate
melt
3.4 years ago by optimistsso4co3 ▴ 140
1
vote
1
reply
1.4k
views
Is it possible to add variant type "VT" to each variant in vcf?
bcftools
updated 3.5 years ago by 45k • written 3.5 years ago by ▴ 140
0
votes
3
replies
1.1k
views
gatk requests enormous amounts of memory. How to limit it?
gatk
updated 3.5 years ago by ▴ 840 • written 3.5 years ago by ▴ 140
0
votes
0
replies
686
views
How to extract region from GVCF file?
GVCF
3.5 years ago by optimistsso4co3 ▴ 140
1
vote
1
reply
768
views
How to calculate indels per individual?
vcf
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 140
1
vote
1
reply
1.6k
views
How to prepare vcf for use with Picard?
picard
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 140
0
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0
replies
640
views
How to fill vcf ALT field for sites where it's missing?
vcf
3.8 years ago by optimistsso4co3 ▴ 140
0
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0
replies
1.7k
views
Comment: Comment: How to correct for allele frequency mismatches?
3.8 years ago by optimistsso4co3 ▴ 140
2
votes
2
replies
1.7k
views
How to correct for allele frequency mismatches?
plink
3.8 years ago by optimistsso4co3 ▴ 140
6
votes
10
replies
2.8k
views
Why isn't it a common practice to call variant for every position in human genome?
ngs
updated 3.9 years ago by 23k • written 3.9 years ago by ▴ 140
1
vote
0
replies
2.8k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
3.9 years ago by optimistsso4co3 ▴ 140
0
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0
replies
2.8k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
3.9 years ago by optimistsso4co3 ▴ 140
0
votes
1
reply
2.8k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
3.9 years ago by optimistsso4co3 ▴ 140
0
votes
1
reply
2.8k
views
Comment: Comment: Why isn't it a common practice to call variant for every position in human genom
3.9 years ago by optimistsso4co3 ▴ 140
0
votes
1
reply
867
views
Fastest pipeline for large scale joint genotype calling?
calling
updated 3.9 years ago by 166k • written 3.9 years ago by ▴ 140
0
votes
0
replies
713
views
Is there such thing as GVCF for structural variants allowing population genetics on SVs?
sv
3.9 years ago by optimistsso4co3 ▴ 140
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