Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.4k
views
SnpSift to annotate vcf with multiple databases
annotate vcf SnpSift
updated 2.7 years ago by ▴ 80 • written 3.9 years ago by ▴ 60
0
votes
0
replies
852
views
Comment: Comment: liftover bed not matching panel gene names
3.3 years ago by whb ▴ 60
0
votes
1
reply
852
views
liftover bed not matching panel gene names
liftover vcf bed bedtools
3.3 years ago by whb ▴ 60
0
votes
0
replies
1.0k
views
Using snpsift to annotate vcf with dbsnp and Clinvar
snpsift
3.5 years ago by whb ▴ 60
0
votes
0
replies
703
views
Real variant - Minimum allele frequency and alt count?
alt somatic af vcf
3.5 years ago by whb ▴ 60
0
votes
0
replies
1.2k
views
Comment: Comment: Mutations in contiguous sites within a sample
3.6 years ago by whb ▴ 60
0
votes
2
replies
1.2k
views
Mutations in contiguous sites within a sample
snp vcf
3.5 years ago by whb ▴ 60
0
votes
0
replies
1.8k
views
Comment: Comment: Determine strand info of somatic mutations
3.6 years ago by whb ▴ 60
0
votes
1
reply
1.8k
views
Comment: Comment: Determine strand info of somatic mutations
3.7 years ago by whb ▴ 60
0
votes
5
replies
1.8k
views
Determine strand info of somatic mutations
strand DNA
updated 3.6 years ago by 21k • written 3.7 years ago by ▴ 60
0
votes
0
replies
1.5k
views
Comment: Comment: lofreq empty output?
3.9 years ago by whb ▴ 60
0
votes
0
replies
677
views
dbSNP specific to C57BL6J
c57bl6j dbsnp
updated 3.9 years ago by 90k • written 3.9 years ago by ▴ 60
0
votes
0
replies
701
views
detect and combine indels into one line like Mutect2 format
indels snvs vcf
3.9 years ago by whb ▴ 60
1
vote
5
replies
2.5k
views
bed intersect to get gene names from bed
bedtools intersect
updated 4.0 years ago by 36k • written 4.0 years ago by ▴ 60
0
votes
0
replies
2.5k
views
Comment: Comment: bed intersect to get gene names from bed
4.0 years ago by whb ▴ 60
0
votes
1
reply
2.5k
views
Comment: Comment: bed intersect to get gene names from bed
4.0 years ago by whb ▴ 60
0
votes
0
replies
666
views
filter Refseq file with bed? to produce coverage per gene
coverage bed refseq
4.0 years ago by whb ▴ 60
0
votes
1
reply
2.1k
views
Comment: Comment: DepthOfCoverage Error: no suitable codec found
4.0 years ago by whb ▴ 60
1
vote
3
replies
2.1k
views
DepthOfCoverage Error: no suitable codec found
Coverage DepthOfCoverage Depth
updated 4.0 years ago by 166k • written 4.0 years ago by ▴ 60
4
votes
6
replies
2.2k
views
A bash question
bash
updated 4.1 years ago by 154k • written 4.1 years ago by ▴ 60
0
votes
1
reply
1.0k
views
What determine if a panel can be used for copy number analysis?
panel copy number targeted
updated 4.5 years ago by ★ 3.0k • written 4.5 years ago by ▴ 60
0
votes
1
reply
1.2k
views
driver genes per sample or per group?
driver genes
updated 2.7 years ago by ▴ 940 • written 4.6 years ago by ▴ 60
2
votes
2
replies
1.4k
views
Convert protein name to letter e.g. p.Arg135Trp to p.R135W
aminoacid
updated 4.6 years ago by 21k • written 4.6 years ago by ▴ 60
1
vote
2
replies
984
views
Gene expression and chromatin state
DNA expression chromatin
4.7 years ago by whb ▴ 60
0
votes
0
replies
634
views
How many variant caller is needed for somatic mutations?
SNP variant caller
4.7 years ago by whb ▴ 60
1
vote
0
replies
973
views
Tumour mutation burden vs mutant cells ratio vs Variant allele fraction
vaf maf tmb
4.7 years ago by whb ▴ 60
0
votes
0
replies
1.1k
views
Filtering vcf with dbSNP
dbSNP filter bcftools
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 60
0
votes
0
replies
782
views
bcftools isec: tandem mutations
bcftools isesc
4.8 years ago by whb ▴ 60
0
votes
0
replies
6.6k
views
Comment: C: bcftools filter or bcftools isec to EXCLUDE dbSNP snps
4.8 years ago by whb ▴ 60
0
votes
1
reply
6.6k
views
Comment: C: bcftools filter or bcftools isec to EXCLUDE dbSNP snps
4.8 years ago by whb ▴ 60
0
votes
0
replies
768
views
Refseq file 0 coding length
gatk DepthOfCoverage
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 60
1
vote
5
replies
4.5k
views
Which adapters to use for trimming?
trimming adapters trimmomatic
updated 4.9 years ago by 20 • written 4.9 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Comment: C: NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
4.9 years ago by whb ▴ 60
0
votes
3
replies
1.4k
views
NCBI build=37 in MAF despite using GRCm38 all along the variant calling workflow
MAF genome reference GRCm38 NCBI build
4.9 years ago by whb ▴ 60
0
votes
0
replies
1.3k
views
Different dbSNP files input yield different variants?
SNP gatk dbSNP mutect2
4.9 years ago by whb ▴ 60
0
votes
1
reply
1.3k
views
Comment: C: Snpefftomaf error: Changing the format column in vcf file
4.9 years ago by whb ▴ 60
0
votes
3
replies
1.3k
views
Snpefftomaf error: Changing the format column in vcf file
vcf maf snpeff snpefftomaf
4.9 years ago by whb ▴ 60
0
votes
0
replies
10k
views
Comment: C: BWA error: no ID within the read group line
4.9 years ago by whb ▴ 60
0
votes
2
replies
10k
views
Comment: C: BWA error: no ID within the read group line
4.9 years ago by whb ▴ 60
4
votes
12
replies
10k
views
6 follow
BWA error: no ID within the read group line
bwa readgroups RG parallel
updated 21 months ago by ▴ 10 • written 4.9 years ago by ▴ 60
0
votes
1
reply
1.1k
views
Difference between dbSNP vcfs
dbSNP SNP vcf
updated 4.9 years ago by ▴ 10 • written 4.9 years ago by ▴ 60
0
votes
1
reply
1.6k
views
samtools idxstats showing accession number and genomic scaffold
samtools idxstats bams
updated 4.9 years ago by 166k • written 4.9 years ago by ▴ 60
0
votes
0
replies
2.6k
views
Known-variant and AF-only files of GATK Mutect2 on Mouse DNA sequencing data
gatk mutect mouse SNP baserecalibrator
4.9 years ago by whb ▴ 60
5
votes
2
replies
4.0k
views
FASTQC after trimming: how do I know if it is good enough to proceed to alignment?
FASTQC Trimming per base sequence content
4.9 years ago by whb ▴ 60
0
votes
0
replies
10k
views
Comment: C: BWA error: no ID within the read group line
4.9 years ago by whb ▴ 60
0
votes
1
reply
10k
views
Comment: C: BWA error: no ID within the read group line
4.9 years ago by whb ▴ 60
0
votes
0
replies
2.1k
views
Comment: C: Tools for DNA sequencing saturation analysis
4.9 years ago by whb ▴ 60
0
votes
1
reply
2.1k
views
Comment: C: Tools for DNA sequencing saturation analysis
5.0 years ago by whb ▴ 60
1
vote
4
replies
2.1k
views
Tools for DNA sequencing saturation analysis
snp dna saturation analysis coverage
5.0 years ago by whb ▴ 60
0
votes
2
replies
1.3k
views
Using Parallel GNU
parallel unix trimming
updated 5.0 years ago by 45k • written 5.0 years ago by ▴ 60
51 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6