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2
votes
3
replies
1.0k
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Obtain genomic coordinates of all occurrences of a small sequence (i.e: TCTTCTC) in a reference genome
biopython binding-site genomics
updated 10 months ago by 4.2k • written 10 months ago by ▴ 10
0
votes
0
replies
399
views
Check most expressed isoform of mouse gene in specific tissue
FANTOM gene-expression MGI mouse
updated 13 months ago by 43k • written 13 months ago by ▴ 10
3
votes
1
reply
1.1k
views
ChIP-seq Peak calling from BED or WIG file
ENCODE ChIP-seq
updated 2.6 years ago by 82k • written 2.6 years ago by ▴ 10
0
votes
1
reply
524
views
Histone marks enrichment analysis
RNA-Seq
updated 2.7 years ago by ▴ 500 • written 2.7 years ago by ▴ 10
2
votes
1
reply
528
views
Handling RNA-seq samples from the same individual in DEseq2 analysis
DEseq2 RNA-seq
updated 2.8 years ago by ★ 16k • written 2.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Extract reads mapped within chosen intronic region from BAM file (no junctions)
bedtools RNA-seq samtools
updated 3.0 years ago by 161k • written 3.0 years ago by ▴ 10
1
vote
1
reply
832
views
About gene expression data in FPKM stored in public databases
RNA-Seq
updated 3.6 years ago by 100k • written 3.6 years ago by ▴ 10
0
votes
0
replies
486
views
Histone modifications enrichment from genomic coordinates
sequence
3.8 years ago by gspirito ▴ 10
0
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1
reply
1.4k
views
Comment: C: RNA-seq based gene signature analysis
4.0 years ago by gspirito ▴ 10
3
votes
3
replies
1.4k
views
RNA-seq based gene signature analysis
RNA-Seq
updated 4.0 years ago by 87k • written 4.0 years ago by ▴ 10
3
votes
3
replies
1.4k
views
Unbiased clustering from bulk tissue RNA-seq?
RNA-Seq clustering
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 10
2
votes
1
reply
857
views
Chromatin states in human neurons?
ChIP-Seq chromatin states neuron
updated 4.3 years ago by ★ 2.9k • written 4.3 years ago by ▴ 10
1
vote
2
replies
812
views
How can I assess the probability of a gene being disease-related?
gene networks gene gene interactions
updated 4.6 years ago by 47k • written 4.6 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Problem with Cytoskape/DyNets
DyNets Cytoscape gene network
4.7 years ago by gspirito ▴ 10
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