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Showing :
questions
0
votes
5
replies
1.2k
views
cropped and incomplete "genus" stacked barplot generated with R
mothur
16s
R
software error
phyloseq
3.9 years ago by
dpc
▴ 240
0
votes
2
replies
2.3k
views
ERROR:Error in x[seq_len(n)] : object of type 'S4' is not subsettable
heatmap
phyloseq
mothur
16s-rRNA
updated 15 months ago by
Ram
44k • written 3.9 years ago by
dpc
▴ 240
0
votes
0
replies
690
views
Cut off for dist.seqs step in MOTHUR
mothur
16s
metagenomics
3.9 years ago by
dpc
▴ 240
0
votes
3
replies
1.2k
views
Mock community in MOTHUR
mothur
16s
metagenomics
updated 2.1 years ago by
sandymonisha46
• 0 • written 3.9 years ago by
dpc
▴ 240
0
votes
5
replies
888
views
Mothur software analysis
mothur
16s
metagenome
gut
updated 3.9 years ago by
Asaf
10k • written 3.9 years ago by
dpc
▴ 240
0
votes
1
reply
645
views
Can I analyse single-ended WGS data with average readlength 35 bp by MetPhlAn?
metaphlan
wgs
bowtie
readlength
metagenomics
4.0 years ago by
dpc
▴ 240
1
vote
4
replies
2.3k
views
FASTQC result FAILED in adapter content and k-mer section!!!
wgs
fastqc
quality control
4.0 years ago by
dpc
▴ 240
0
votes
0
replies
622
views
454 GS FLX WGS data analysis
maetagenome
microbiome
16s
wgs
metaphlan
4.0 years ago by
dpc
▴ 240
1
vote
1
reply
595
views
Quality checks for submitted data in SRA & EMBL
NCBI
EMBL
FASTQ
QC
updated 4.0 years ago by
ATpoint
82k • written 4.0 years ago by
dpc
▴ 240
0
votes
0
replies
997
views
MOTHUR: screen.seqs option "maxlength" & "minlength"
16s
mothur
metagenome
microbiome
4.0 years ago by
dpc
▴ 240
0
votes
6
replies
1.0k
views
MOTHUR:16s analysis: maximum ambiguity
16s
mothur
ambiguity
protocol
4.0 years ago by
dpc
▴ 240
0
votes
0
replies
708
views
MOTHUR "screen.seqs" command option
mothur
16s
metagenome
microbiome
4.0 years ago by
dpc
▴ 240
1
vote
3
replies
856
views
control and test samples name of PRJEB12123
sequencing
SRA
METAGENOMICS
4.0 years ago by
dpc
▴ 240
3
votes
1
reply
1.9k
views
WARNING message when run Rscript from command line
R
updated 4.1 years ago by
Kevin Blighe
88k • written 4.1 years ago by
dpc
▴ 240
0
votes
2
replies
1.3k
views
Extract 16S rRNA V6 region
16S rRNA
MOTHUR
taxonomy
microbiome
4.1 years ago by
dpc
▴ 240
0
votes
0
replies
544
views
MOTHUR: precluster.seqs command
mothur
16S rRNA
sequence
sequencing
4.1 years ago by
dpc
▴ 240
0
votes
0
replies
767
views
MOTHUR command "chimera.vsearch"
MOTHUR
16S rRNA
metagenomics
mcirobiome
4.1 years ago by
dpc
▴ 240
0
votes
0
replies
821
views
Regarding MOTHUR software: 27f and 1492r primer region
alignment
next-gen
16S rRNA
4.1 years ago by
dpc
▴ 240
0
votes
0
replies
557
views
Metaphlan2 trial run result discrepency
alignment
next-gen
metagenomics
microbiome
4.1 years ago by
dpc
▴ 240
0
votes
4
replies
1.0k
views
Metagenome (Microbiome) composition and functional profiling
MOTHUR
16S rRNA
metagenome
microbiome
updated 4.2 years ago by
Asaf
10k • written 4.2 years ago by
dpc
▴ 240
0
votes
9
replies
12k
views
ERROR: "ascp: Failed to open TCP connection for SSH, exiting."
ENA
SRA
ascp
aspera connect
4.2 years ago by
dpc
▴ 240
5
votes
9
replies
5.1k
views
Problem while downloading SRR file via **ASPERA CONNECT**
sequence
next-gen
SRR
aspera connect
updated 4.2 years ago by
ATpoint
82k • written 4.2 years ago by
dpc
▴ 240
0
votes
2
replies
1.2k
views
SRA run data access
sequence
sra
ncbi
next-gen
illumina
4.2 years ago by
dpc
▴ 240
1
vote
4
replies
984
views
NCBI SRA database sample: control vs test
next-gen-sequencing
updated 14 months ago by
Ram
44k • written 4.2 years ago by
dpc
▴ 240
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