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questions
2
votes
2
replies
281
views
ComplexHeatmap with specific rownames
ComplexHeatmap
updated 18 days ago by
Ram
43k • written 19 days ago by
mrashad
▴ 80
4
votes
7
replies
719
views
Bioconductor packages
BiocManager
Bioconductor
updated 9 weeks ago by
Michael
54k • written 10 weeks ago by
mrashad
▴ 80
3
votes
2
replies
260
views
Linux dependencies in Docker file
linux
docker
updated 10 weeks ago by
ATpoint
82k • written 10 weeks ago by
mrashad
▴ 80
0
votes
1
reply
199
views
GEO database
Series
Datasets
updated 12 weeks ago by
jv
★ 1.8k • written 12 weeks ago by
mrashad
▴ 80
2
votes
2
replies
443
views
Microarray analysis using Limma
microarray
voom
limma
12 weeks ago by
mrashad
▴ 80
3
votes
2
replies
505
views
R script in docker
R
Docker
Visual-studio-code
updated 4 months ago by
Jean-Karim Heriche
27k • written 4 months ago by
mrashad
▴ 80
4
votes
5
replies
767
views
SRA and Bioproject IDs
Bioproject
GEO
SRA
updated 8 months ago by
GenoMax
141k • written 8 months ago by
mrashad
▴ 80
1
vote
1
reply
520
views
just one plot appears in the shiny application not all
plot
source
shiny
code
updated 13 months ago by
bkleiboeker
▴ 370 • written 13 months ago by
mrashad
▴ 80
3
votes
7
replies
1.4k
views
Inclusion of R script in shiny application
shiny
script
13 months ago by
mrashad
▴ 80
0
votes
1
reply
459
views
Transcripts Flag
flags
qRT-PCR
transcripts
primers
updated 2.4 years ago by
GenoMax
141k • written 2.4 years ago by
mrashad
▴ 80
2
votes
2
replies
769
views
TCGA samples
TCGA
Samplestype
2.9 years ago by
mrashad
▴ 80
6
votes
8
replies
1.3k
views
Diseases related pathways
pathways
wikipathway
kegg
reactome
updated 3.0 years ago by
darklings
▴ 570 • written 3.3 years ago by
mrashad
▴ 80
1
vote
2
replies
1.0k
views
KEGG orthology of microbiome
microbiome
KO
3.0 years ago by
mrashad
▴ 80
1
vote
8
replies
3.2k
views
XGBoost on the unbalanced data
unbalanced_data
3.0 years ago by
mrashad
▴ 80
0
votes
1
reply
652
views
The effect of metabolomics on other omics
metabolomics
multiomics
updated 13 months ago by
Ram
43k • written 3.1 years ago by
mrashad
▴ 80
0
votes
2
replies
859
views
I need to visualize the correlation in better way
multi-omics
updated 13 months ago by
Ram
43k • written 3.1 years ago by
mrashad
▴ 80
1
vote
2
replies
1.0k
views
plotting the tree in XGBoost
XGBoost
updated 13 months ago by
Ram
43k • written 3.1 years ago by
mrashad
▴ 80
0
votes
0
replies
442
views
p-adjusted threshold in pathfindR
pathfindR
pathway-enrichment-analysis
updated 13 months ago by
Ram
43k • written 3.2 years ago by
mrashad
▴ 80
0
votes
0
replies
504
views
Visualization of common pathways
visualization
updated 13 months ago by
Ram
43k • written 3.2 years ago by
mrashad
▴ 80
0
votes
0
replies
523
views
Tissue specificity for metabolites and bacteria
metabolome
metagenome
updated 13 months ago by
Ram
43k • written 3.2 years ago by
mrashad
▴ 80
4
votes
3
replies
1.2k
views
Heatmaps by pheatmap
visualization
heatmap
updated 13 months ago by
Ram
43k • written 3.3 years ago by
mrashad
▴ 80
2
votes
3
replies
4.0k
views
scale free topology in WGCNA
network-analysis
WGCNA
updated 13 months ago by
Ram
43k • written 3.3 years ago by
mrashad
▴ 80
2
votes
1
reply
864
views
Transcripts per kilobase million
TPM
updated 3.3 years ago by
rpolicastro
13k • written 3.3 years ago by
mrashad
▴ 80
7
votes
8
replies
1.6k
views
different IDs conversion to Gene ID/symbol
multi-omics
updated 13 months ago by
Ram
43k • written 3.4 years ago by
mrashad
▴ 80
0
votes
0
replies
527
views
Tissue specificity for genes, metabolites and bacteria
tissue-specificity
bacteria
genes
metabolites
updated 13 months ago by
Ram
43k • written 3.5 years ago by
mrashad
▴ 80
2
votes
1
reply
544
views
Differential expression analysis
RNA-seq
updated 13 months ago by
Ram
43k • written 3.5 years ago by
mrashad
▴ 80
0
votes
3
replies
737
views
KEGG pathway IDs
pathway-analysis
16srRNA
updated 13 months ago by
Ram
43k • written 3.5 years ago by
mrashad
▴ 80
0
votes
8
replies
1.0k
views
Suggestion for tools to data transfer
RNA-Seq
3.5 years ago by
mrashad
▴ 80
1
vote
1
reply
694
views
difference between different sequencing technologies
sequencing
updated 13 months ago by
Ram
43k • written 3.6 years ago by
mrashad
▴ 80
1
vote
4
replies
1.2k
views
unclassified taxonomy rank
16s
taxonomy
updated 3.6 years ago by
Mensur Dlakic
★ 27k • written 3.6 years ago by
mrashad
▴ 80
0
votes
0
replies
524
views
SAMBA algorithm takes much of time
biclustering
updated 13 months ago by
Ram
43k • written 3.7 years ago by
mrashad
▴ 80
10
votes
4
replies
7.1k
views
pearson correlation or Euclidean distance for clustering?
gene-expression
updated 13 months ago by
Ram
43k • written 3.6 years ago by
mrashad
▴ 80
1
vote
2
replies
785
views
Is there a way to find Go terms for genes with kegg orthology (ko) ID ?
functional-enrichment-analysis
updated 13 months ago by
Ram
43k • written 3.7 years ago by
mrashad
▴ 80
6
votes
6
replies
1.9k
views
pathway analysis for metabolites
metabolomics
updated 3.7 years ago by
Egon Willighagen
5.4k • written 3.9 years ago by
mrashad
▴ 80
0
votes
0
replies
572
views
How to choose an optimal threshold for binary discretization and the optimal algorithm for biclustering ?
Biclustering
BicAT
3.7 years ago by
mrashad
▴ 80
0
votes
2
replies
571
views
Functional enrichment analysis
Functional_enrichment_analysis
3.8 years ago by
mrashad
▴ 80
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